Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2321 | ATGAACGATCTCTTCTCCTCCGATTCCTTCCGCCGCGAGCAGCGCCACCACGCCGTCGAGATGGAGGCCGCCGCCGCCGCCGCGCCGTCTTCAACGACGATCAATCTCAACGGCTTCTTCGAAGACGTGGAGTCCGTGAAGGCGGAATTGACGGAGCTCGAACGCCTCCATCGAAACCTCCAGAACTCTCACGAACAGAGCAAGACTCTGCACAACTCGAAGGCGATTAAGGATCTTCGATCTCGAATGGAATCGGATGTGACTCTGGCTCTGAAGAAGGCTAGGTTTATCAAGATCCGATTGGAGGATCTCGACCGGTCCAATGCCGAGAACCGGAATCTTCCTGGTTGCGGCTATGGCTCCTCCGCCGACCGGTCCAGAACTTCGGTCGTCAATGGATTGAGGAAGAAGCTGTGTGATTCGATGGAGAGTTTCAACAGATTGAGAGAGGAGATCTCGTCGACGTATAAGGAGACGATTGAACGAAGATATTTCACCATTACAGGGGAAAATCCGGATGAGAAGACTGTTGATCTGTTGATCTCTACAGGTGAAAGCGAAACATTCCTTGAAAAAGCAATACAAAAGCAAGGAAGAGGCAGAGTTTTGGAAACGATCCAAGAGATTCAAGAGCGGCACGACGCAGTGAAGGACATGGAGAGGAATCTGAGAGAGCTGCACCAAGTGTTCATGGACATGGCGGTGCTGGTCCAAGCGCAGGGCCAGCATTTGAACGACATTGAGAGCCAAGTGACTCGAGCCAACTCGGTCATCAGGCACGGCACCACCGAGCTTCAGAAGGCCAGATTCTACCAAAAAAACACCCGCAAATGGATCTGCATTGGCGTCTCTGTTTTTATAGTCATCCTCTTGATCATCATCATTTCCGTCGTCGTCAAGAATAAGAACAACAACAACGGATAG | 924 | 51.3 | MNDLFSSDSFRREQRHHAVEMEAAAAAAPSSTTINLNGFFEDVESVKAELTELERLHRNLQNSHEQSKTLHNSKAIKDLRSRMESDVTLALKKARFIKIRLEDLDRSNAENRNLPGCGYGSSADRSRTSVVNGLRKKLCDSMESFNRLREEISSTYKETIERRYFTITGENPDEKTVDLLISTGESETFLEKAIQKQGRGRVLETIQEIQERHDAVKDMERNLRELHQVFMDMAVLVQAQGQHLNDIESQVTRANSVIRHGTTELQKARFYQKNTRKWICIGVSVFIVILLIIIISVVVKNKNNNNG | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 44563397 | 44565110 | + | Lag0012813.1 | Lac1g2321 | 595892 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2321 | 307 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 206 | 268 | IPR000727 | - | |
Lac1g2321 | 307 | Pfam | Syntaxin | 39 | 241 | IPR006011 | GO:0016020(InterPro) | |
Lac1g2321 | 307 | Gene3D | - | 201 | 300 | - | - | |
Lac1g2321 | 307 | Coils | Coil | 36 | 70 | - | - | |
Lac1g2321 | 307 | PANTHER | SYNTAXIN | 38 | 289 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Lac1g2321 | 307 | Gene3D | - | 34 | 166 | - | - | |
Lac1g2321 | 307 | CDD | SNARE_syntaxin1-like | 205 | 267 | - | - | |
Lac1g2321 | 307 | Coils | Coil | 206 | 226 | - | - | |
Lac1g2321 | 307 | SMART | SynN_4 | 31 | 157 | IPR006011 | GO:0016020(InterPro) | |
Lac1g2321 | 307 | SMART | tSNARE_6 | 201 | 268 | IPR000727 | - | |
Lac1g2321 | 307 | FunFam | Syntaxin 132 | 199 | 299 | - | - | |
Lac1g2321 | 307 | ProSitePatterns | Syntaxin / epimorphin family signature. | 212 | 251 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Lac1g2321 | 307 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 33 | 163 | - | - | |
Lac1g2321 | 307 | Pfam | SNARE domain | 244 | 294 | IPR000727 | - | |
Lac1g2321 | 307 | SUPERFAMILY | t-snare proteins | 35 | 261 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Lac1g2321 | 307 | CDD | SynN | 36 | 193 | IPR006011 | GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g2747 | Lac-Chr10:41912534 | Lac1g2321 | Lac-Chr1:44563397 | 4.70E-110 | dispersed | |
Lac1g1718 | Lac-Chr1:38659474 | Lac1g2321 | Lac-Chr1:44563397 | 1.30E-59 | dispersed | |
Lac1g2321 | Lac-Chr1:44563397 | Lac9g2066 | Lac-Chr9:40297547 | 1.30E-48 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g2321 | K08486 | - | csv:101213443 | 465.692 |