Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2321 ATGAACGATCTCTTCTCCTCCGATTCCTTCCGCCGCGAGCAGCGCCACCACGCCGTCGAGATGGAGGCCGCCGCCGCCGCCGCGCCGTCTTCAACGACGATCAATCTCAACGGCTTCTTCGAAGACGTGGAGTCCGTGAAGGCGGAATTGACGGAGCTCGAACGCCTCCATCGAAACCTCCAGAACTCTCACGAACAGAGCAAGACTCTGCACAACTCGAAGGCGATTAAGGATCTTCGATCTCGAATGGAATCGGATGTGACTCTGGCTCTGAAGAAGGCTAGGTTTATCAAGATCCGATTGGAGGATCTCGACCGGTCCAATGCCGAGAACCGGAATCTTCCTGGTTGCGGCTATGGCTCCTCCGCCGACCGGTCCAGAACTTCGGTCGTCAATGGATTGAGGAAGAAGCTGTGTGATTCGATGGAGAGTTTCAACAGATTGAGAGAGGAGATCTCGTCGACGTATAAGGAGACGATTGAACGAAGATATTTCACCATTACAGGGGAAAATCCGGATGAGAAGACTGTTGATCTGTTGATCTCTACAGGTGAAAGCGAAACATTCCTTGAAAAAGCAATACAAAAGCAAGGAAGAGGCAGAGTTTTGGAAACGATCCAAGAGATTCAAGAGCGGCACGACGCAGTGAAGGACATGGAGAGGAATCTGAGAGAGCTGCACCAAGTGTTCATGGACATGGCGGTGCTGGTCCAAGCGCAGGGCCAGCATTTGAACGACATTGAGAGCCAAGTGACTCGAGCCAACTCGGTCATCAGGCACGGCACCACCGAGCTTCAGAAGGCCAGATTCTACCAAAAAAACACCCGCAAATGGATCTGCATTGGCGTCTCTGTTTTTATAGTCATCCTCTTGATCATCATCATTTCCGTCGTCGTCAAGAATAAGAACAACAACAACGGATAG 924 51.3 MNDLFSSDSFRREQRHHAVEMEAAAAAAPSSTTINLNGFFEDVESVKAELTELERLHRNLQNSHEQSKTLHNSKAIKDLRSRMESDVTLALKKARFIKIRLEDLDRSNAENRNLPGCGYGSSADRSRTSVVNGLRKKLCDSMESFNRLREEISSTYKETIERRYFTITGENPDEKTVDLLISTGESETFLEKAIQKQGRGRVLETIQEIQERHDAVKDMERNLRELHQVFMDMAVLVQAQGQHLNDIESQVTRANSVIRHGTTELQKARFYQKNTRKWICIGVSVFIVILLIIIISVVVKNKNNNNG 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 44563397 44565110 + Lag0012813.1 Lac1g2321 595892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2321 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Lac1g2321 307 Pfam Syntaxin 39 241 IPR006011 GO:0016020(InterPro)
Lac1g2321 307 Gene3D - 201 300 - -
Lac1g2321 307 Coils Coil 36 70 - -
Lac1g2321 307 PANTHER SYNTAXIN 38 289 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lac1g2321 307 Gene3D - 34 166 - -
Lac1g2321 307 CDD SNARE_syntaxin1-like 205 267 - -
Lac1g2321 307 Coils Coil 206 226 - -
Lac1g2321 307 SMART SynN_4 31 157 IPR006011 GO:0016020(InterPro)
Lac1g2321 307 SMART tSNARE_6 201 268 IPR000727 -
Lac1g2321 307 FunFam Syntaxin 132 199 299 - -
Lac1g2321 307 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lac1g2321 307 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 33 163 - -
Lac1g2321 307 Pfam SNARE domain 244 294 IPR000727 -
Lac1g2321 307 SUPERFAMILY t-snare proteins 35 261 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lac1g2321 307 CDD SynN 36 193 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2747 Lac-Chr10:41912534 Lac1g2321 Lac-Chr1:44563397 4.70E-110 dispersed
Lac1g1718 Lac-Chr1:38659474 Lac1g2321 Lac-Chr1:44563397 1.30E-59 dispersed
Lac1g2321 Lac-Chr1:44563397 Lac9g2066 Lac-Chr9:40297547 1.30E-48 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2321 K08486 - csv:101213443 465.692