Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2322 ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCCAGCAACATCGGCGGATTCGGATACGGAATCGGCGTCTCCTTAGGGCTTTTGATTCTCATCACTACAATCCTCCTCGCTTCCTATTACTGCACCAGAACCGGCCTCTCGACCACCGCTGTGATTCAGAGGAACGCCAATCGCTCGCCGCAGCCGCCGGAGGAAGCCGTCGTCGTCGACATCGGACTCGATCAGGAGACGATTACGAGTTATCCGAAATTGCTCTATTCGGAGGCGAAGCTTCAGAAGAACGATTCGACTGCTTCGTGTTGCTCAATCTGTTTGGCCGATTACAAGAACTCTGATGTTCTTCGCCTTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCCACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGTCGGCGCGATTAA 510 56.08 MNNGTADSGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRTGLSTTAVIQRNANRSPQPPEEAVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 44567882 44568391 + Lag0012814.1 Lac1g2322 595893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2322 169 CDD RING-H2_EL5-like 103 146 - -
Lac1g2322 169 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 163 IPR045899 -
Lac1g2322 169 SUPERFAMILY RING/U-box 80 151 - -
Lac1g2322 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 150 IPR013083 -
Lac1g2322 169 Pfam Ring finger domain 103 146 IPR001841 -
Lac1g2322 169 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Lac1g2322 169 FunFam E3 ubiquitin-protein ligase ATL6 66 151 - -
Lac1g2322 169 SMART ring_2 104 145 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0587 Lac-Chr13:4351457 Lac1g2322 Lac-Chr1:44567882 1.10E-20 dispersed
Lac1g2322 Lac-Chr1:44567882 Lac7g0195 Lac-Chr7:1543241 1.20E-25 dispersed
Lac1g2322 Lac-Chr1:44567882 Lac10g2738 Lac-Chr10:41834505 6.30E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2322 - - - 0.0