Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2322 | ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCCAGCAACATCGGCGGATTCGGATACGGAATCGGCGTCTCCTTAGGGCTTTTGATTCTCATCACTACAATCCTCCTCGCTTCCTATTACTGCACCAGAACCGGCCTCTCGACCACCGCTGTGATTCAGAGGAACGCCAATCGCTCGCCGCAGCCGCCGGAGGAAGCCGTCGTCGTCGACATCGGACTCGATCAGGAGACGATTACGAGTTATCCGAAATTGCTCTATTCGGAGGCGAAGCTTCAGAAGAACGATTCGACTGCTTCGTGTTGCTCAATCTGTTTGGCCGATTACAAGAACTCTGATGTTCTTCGCCTTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCCACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGTCGGCGCGATTAA | 510 | 56.08 | MNNGTADSGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRTGLSTTAVIQRNANRSPQPPEEAVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 44567882 | 44568391 | + | Lag0012814.1 | Lac1g2322 | 595893 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2322 | 169 | CDD | RING-H2_EL5-like | 103 | 146 | - | - | |
Lac1g2322 | 169 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 14 | 163 | IPR045899 | - | |
Lac1g2322 | 169 | SUPERFAMILY | RING/U-box | 80 | 151 | - | - | |
Lac1g2322 | 169 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 150 | IPR013083 | - | |
Lac1g2322 | 169 | Pfam | Ring finger domain | 103 | 146 | IPR001841 | - | |
Lac1g2322 | 169 | ProSiteProfiles | Zinc finger RING-type profile. | 104 | 146 | IPR001841 | - | |
Lac1g2322 | 169 | FunFam | E3 ubiquitin-protein ligase ATL6 | 66 | 151 | - | - | |
Lac1g2322 | 169 | SMART | ring_2 | 104 | 145 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0587 | Lac-Chr13:4351457 | Lac1g2322 | Lac-Chr1:44567882 | 1.10E-20 | dispersed | |
Lac1g2322 | Lac-Chr1:44567882 | Lac7g0195 | Lac-Chr7:1543241 | 1.20E-25 | dispersed | |
Lac1g2322 | Lac-Chr1:44567882 | Lac10g2738 | Lac-Chr10:41834505 | 6.30E-48 | transposed |
Pathway information
