Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g2327 | ATGAACAACGGCAGCGCTCGGAAAACTCGACCGCCGCCGCAGAATCCATCACCGGCTCCACCGGCCAAGCACCAGGCACTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGAGAATCTTCTCGACGAGGACGCTCTCATCCTCCGCGACATGGAGGAGCGTCAGGCCCTCGCTTCCCGTCTCTCCAAGTGGGCTCGTCCACCTCTTTCTCAGGATTGCCTGTCCCAGTCGAAGAGCATTGCGTTTCAGCAATTGGAGATTGATTATGTGATCGGGGAAAGTCACAGAGAATTGTTGCCGAATTTGTCTGGCCCTGCCGCTATTCTCAGAATTTTTGGGGTTACGAAGGAAGGACATAGTGTCTGTTGCCATGTTCATGGATTTGAACCATACTTCTACATCAGTTGCCCTCCAGGAATGGGTCCTGATGATATCTCTCTTTTTCACCGAACACTTGAGGCTAGAATGAAGGAGGTAAATAGGAACAGTAAGGCACCCAGTTTTGTGCGCCGTATTGAATTGGTGCAAAAGAGAAGTATTATGTATTACCAGCAGCAGACTTCTCAATCCTTTCTTAAAATTGTAGTTGCACTGCCAACAATGGTCACCAGTTGCCGTGGTATTCTCGACAGAGGCATACAAATCGATGGCTTTGGTATGAAGAGCTTCATGACATATGAAAGCAATGTGCTTTTTGCCCTCCGTTTTATGATTGATTGTAATGTTGTTGGTGGAAACTGGATTGAGGTTCCTGTGGGAAAATATAAGAAAACTGTTAGAAATTTATCATATTGCCAATTGGAGTTTGATTGCCTATATTCAGACTTGATCAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATATTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCTGAGCCTACCCAGGATCCCGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGGACCAACCATTTATTCGCAATGTCATGACTCTTAACTCTTGCTCTCCTATTGCGGGCGTTGATGTCTTATCATTTGATACAGAACGTGAAGTTTTGCTGGCTTGGAGGGATCTAATTCGTGAAGTAGACCCTGATATAATAATTGGATATAACATCTGCAAATTTGATTTGCCATATCTAATTGAGAGAGCCGAGGCACTGAAAATAGCAGAATTTCCATTATTGGGTCGGATCAGGAATAGTAAAGTTCGTGTCAAAGATACAACTTTTTCTTCAAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGTTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGCAATGCAACGAGATTATAAATTAAGTTCGTACTCACTGAATTCTGTTTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCAGATCTTCAAAATGGTAATGCGGAAACACGGAGACGGCTTGCTGTTTATTGTTTAAAGGATGCGTATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCTTTTCTTCTTTCAAGAGGGCAAAGCATAAAGGTACTCTCTCAACTGCTTAGGAAGGCCAAACAGAAAAACCTTGTTATTCCGAATGCTAAACAGGCAGGATCTGATCAAGGAACCTACGAGGGTGCTACAGTTTTGGAAGCGAGGGCTGGGTTCTATGAGAAGCCCATTGCTACGCTGGATTTTGCATCTCTGTATCCATCCATTATGATGGCATATAATTTGTGTTATTGCACTCTGGTGACTCCAGAAGACGTTCGCAAACTAAACCTGCCCCCTGAACATTTCAATAAAACCCCATCTGGTGAGATATTTGTCAAGCCAAATTTACAGAAGGGGATACTTCCTGAAATATTAGAAGAACTATTGACTGCACGGAAAAGAGCAAAAGCAGATTTGAAGGAAGCGAAGGATCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGCTAGCTCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCTACTGTTGGTCAGTTACCGTGTATAGAGATATCATCAAGTGTTACAAGCTATGGTCGACAAATGATTGAGCACACAAAGAAGCTTGTGGAAGATAAATTTACAACACTTGGGGGCTATGAGCACAATGCTGAGGTAATCTATGGTGATACAGATTCTGTTATGGTACAATTTGGTGTGCCCAGTGTAGAAGCAGCAATGATCTTGGGAAGGGAAGCAGCTGACTATATCAGTGGTACTTTCATAAAACCCATCAAGTTGGAGTTTGAGAAGGTTTATTATCCATATCTGTTGATTAGTAAGAAGAGATATGCGGGTTTATTTTGGACTAATCCAAACAAGTTTGACAAGATGGATACTAAAGGCATTGAAACAGTTCGAAGAGATAATTGCTTATTGGTGAAAAACCTTGTAAATGAGTGCTTGCACAAAATTCTTATTGATAGAGATGTCCCTGGGGCAGTTCAATATGTGAAGAACACGATTTCAGATCTGCTTATGAACCGTGTGGATTTATCACTCTTGGTTATCACCAAGGGACTGACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGTAAGCGAGATGCTGCCACTGCTCCAAATGTTGGTGATCGAGTACCTTATGTGATCATTAAAGCTGCAAAAGGTGCCAAGGCATATGAGAGGTCAGAGGATCCCATTTATGTTCTTGAGAATAGCATACCAATAGACCCTCAGTACTATCTCGAGAATCAGATGAGCAAGCCTCTTCTACGAATTTTTGAGCCCATCTTGAAAAATGCTAGCAAGGAACTTCTACATGGAAGTCACACGAGATCAATTTTTATTTCTACTCCTTCAAACAGTGGCATAATGAAATTTGCTAAGAAACAGCTTACCTGCATTGGTTGCAAGGCTCTACTAAGCAAGGCAGACAAAACTCTCTGCGCACACTGCAAAGGAAGAGAAGCAGAACTTTACTGCAAAGCGGTAGCAAATGTTTCTGATTTGGAGATGGTTTTTGGGAGGCTTTGGACGCAGTGCCAAGAATGCCAAGGGTCCCTTCACCAAGATGTCCTCTGTACAAGATTCACGAATGCTATATTTTGGTTTACAGTCGAGACTGTCCAATATTTTATCGAAGAAAGAAGGCACAAAAAGACATGGCCGAAGCTAAACAGCATTTGGAACGTTGGAATTTCTAAATCGTTGAAAGAGCTCATGGTTCTCTTGCACCGTAGTGGTCATCCTCTGGCTTAG | 3345 | 42.51 | MNNGSARKTRPPPQNPSPAPPAKHQALSQEEDFVDEDVFLDENLLDEDALILRDMEERQALASRLSKWARPPLSQDCLSQSKSIAFQQLEIDYVIGESHRELLPNLSGPAAILRIFGVTKEGHSVCCHVHGFEPYFYISCPPGMGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQKRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIDGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRNLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGEDQPFIRNVMTLNSCSPIAGVDVLSFDTEREVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAEALKIAEFPLLGRIRNSKVRVKDTTFSSRQLGTRESKEITLEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPEHFNKTPSGEIFVKPNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMILGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENSIPIDPQYYLENQMSKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLSKADKTLCAHCKGREAELYCKAVANVSDLEMVFGRLWTQCQECQGSLHQDVLCTRFTNAIFWFTVETVQYFIEERRHKKTWPKLNSIWNVGISKSLKELMVLLHRSGHPLA | 1114 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 44601632 | 44619446 | - | Lag0012819.1 | Lac1g2327 | 595898 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g2327 | 1114 | Gene3D | Helix hairpin bin | 641 | 693 | - | - | |
| Lac1g2327 | 1114 | Gene3D | Palm domain of DNA polymerase | 567 | 797 | IPR023211 | - | |
| Lac1g2327 | 1114 | Gene3D | - | 294 | 512 | IPR036397 | GO:0003676(InterPro) | |
| Lac1g2327 | 1114 | CDD | POLBc_delta | 567 | 960 | - | - | |
| Lac1g2327 | 1114 | Gene3D | DNA Polymerase, chain B, domain 1 | 89 | 266 | - | - | |
| Lac1g2327 | 1114 | FunFam | DNA polymerase | 814 | 970 | - | - | |
| Lac1g2327 | 1114 | Gene3D | - | 814 | 969 | IPR042087 | - | |
| Lac1g2327 | 1114 | FunFam | DNA polymerase | 333 | 567 | - | - | |
| Lac1g2327 | 1114 | SUPERFAMILY | DNA/RNA polymerases | 551 | 961 | IPR043502 | - | |
| Lac1g2327 | 1114 | FunFam | DNA polymerase | 90 | 265 | - | - | |
| Lac1g2327 | 1114 | NCBIfam | DNA polymerase (pol2) | 352 | 957 | - | - | |
| Lac1g2327 | 1114 | PANTHER | DNA POLYMERASE CATALYTIC SUBUNIT | 66 | 1058 | IPR050240 | GO:0003887(PANTHER)|GO:0006261(PANTHER)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008296(PANTHER)|GO:0043625(PANTHER)|GO:0045004(PANTHER) | |
| Lac1g2327 | 1114 | SMART | polmehr3 | 293 | 752 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Lac1g2327 | 1114 | SUPERFAMILY | Ribonuclease H-like | 110 | 532 | IPR012337 | - | |
| Lac1g2327 | 1114 | Pfam | DNA polymerase family B | 526 | 959 | IPR006134 | GO:0000166(InterPro)|GO:0003677(InterPro) | |
| Lac1g2327 | 1114 | FunFam | DNA polymerase | 641 | 693 | - | - | |
| Lac1g2327 | 1114 | Pfam | C4-type zinc-finger of DNA polymerase delta | 996 | 1058 | IPR025687 | - | |
| Lac1g2327 | 1114 | Pfam | DNA polymerase family B, exonuclease domain | 229 | 462 | IPR006133 | - | |
| Lac1g2327 | 1114 | CDD | DNA_polB_delta_exo | 290 | 518 | - | - | |
| Lac1g2327 | 1114 | ProSitePatterns | DNA polymerase family B signature. | 740 | 748 | IPR017964 | GO:0000166(InterPro)|GO:0003676(InterPro) | |
| Lac1g2327 | 1114 | PRINTS | DNA-directed DNA-polymerase family B signature | 677 | 689 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Lac1g2327 | 1114 | PRINTS | DNA-directed DNA-polymerase family B signature | 738 | 746 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Lac1g2327 | 1114 | PRINTS | DNA-directed DNA-polymerase family B signature | 585 | 598 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Lac1g2327 | 1114 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g2327 | Lac-Chr1:44601632 | Lac6g2606 | Lac-Chr6:43749015 | 4.70E-67 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac1g2327 | K02327 | - | csv:101219332 | 2034.22 |