Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2377 ATGCCTGCTTGGTGGGTAAGAAAATTCAGTAAAAACAAGGAGCATCACAATCACCCCACTACCTTTCTCAGCTCCTCCAAGTCTTCTTCCCCCAAAAGTGACCCTAAGAAGCCCACCGATAAGCCCAGGAGCTTCGATGAGGTCTCTGCTGTGATTTTCTCTCGCAGTTCCCCGAGGTCCAGCAGGGATCTCGGCTCTTCTGGGGGTGCTGATCGTGGCGGCTCTTCTGGGTTTTCTGGGTTTGACTCCGATAGTGGGGATAAGAGTCATCCTCTTCCTCGACCTAATAATACTTCCGCCCTTGGGATTGATCAAGGAGTCGGGATTGGATCTGGGTCGGCTTCGGTTTCCAGTGTTAGCTCTTGTGGCTCTTCGGATGATCATCCATCTTCTCACGAACAGCTTCAATTTGGAGGTTACAGGTGGGTTTCTTATTTGGAAGTTCCGTGTGCTAAGCAGTCTATTCTCACTGTTAAGTTCTTGGTGAAATGGAGGATTTTAATGGCTGATAATATTAAAGGATATGCCGATACCAGAATAGAGACCAGGCCAAGAAGTCCAGGTCCAGGATCAAGAGGACCCACCAGTCCTACATCGCCTCTCAACCCACGGTTCTGTGGCATGAGTCTAGAGTCTCCTACAGGCAAGCTAGATGATGGTAAGGGTCGATGTCATAAGCTGCCGCTTCCTCCTCCTCCAAGTTCTCCCACCAGCCCTTCTTCCTTGACCACGCAATCTTCCTTGACCAGCCCTTCTTCCTTGACCACGCCATCTAAGTGGAAGAAAGGAAAACTTCTAGGAAGAGGAACATTTGGGCATGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAGGTCAGGGTTATTAGTGATGACTCGACATCAAAGGAATGTCTCAAGCAATTGAACCAGGAGATAACTGTGCTCAGTCAGTTGTCGCATCCAAACATCGTCCGGTACTATGGTAGTGAAATGGGTGAAGAATCGCTCTCGGTGTACTTAGAATACGTCTCCGGCGGTTCAATTCACAAGTTGCTTCAGGAATATGGCGCCTTCAAGGAACCTGTTATAAGAAATTATACCCGAAAGATTCTTTCTGGGCTTGCTTATCTGCATGGGAGAAATACAGTGCATAGGGACATCAAAGGGGCAAACATCTTAGTGGATCCAAATGGCGAGGTCAAGTTGGTTGACTTTGGCATGGCAAAACATATAACGAATTGTACTTCGATGCTTTCTTTCAAAGGTAGTCCCTATTGGATGGCCCCTGAGGTTGTGATGAATACAAATGGCTACAGTATTGCTGTAGATATTTGGAGTTTAGGGTGTACGGTTCTGGAAATGGCAACATCTAAACCGCCTTGGAACAAATACGAAGGGGTGGCTGCCATTTTCAAAATTGGGAATAGTAAAGACATTCCTGAAATTCCAGACCATCTCTCCAATGATGCTAAACATTTTGTGCAATTATGCTTGCAACGGGATCCATCTGCACGCCCCTCTGCTGCAGAACTACTGGATCACCCTTTCGTTCAAGATGCAGTAACACCAAGAGCATCTGATGTCAACTTTTCCATGGATGCATTTCCCTTTAGCTTTGATGGAAGCCAGACTCCGCCATTGTTAGATCGGCAGCCAAACAGAAAAAGTATAAGCATATGTGATGGAGATTATGTGACAAACCCAATAATCTCTTCCAGAGCTTCGAGGAGTCCTAGGGGAAATGCAAGATTAATCACATCCTTGCCCGTCTCTCCATGCTCGAGTCCATTACGGTCATATGGCCCTGCACACCAGAGCTGTTATCTTTCTCCACCTCACACGTCTTATATGGGGTTGGGTCAAAGTGGTTACAATTTGAATGAATACGCATATAACACGAGACCGAACGCATTGTTCACCCTCGACCCTTCACGAGATTCATCGCTATTGAAAGTGCAGACTCATGGTGGATCACCAAGAAGACCTCTTTGA 1989 46.51 MPAWWVRKFSKNKEHHNHPTTFLSSSKSSSPKSDPKKPTDKPRSFDEVSAVIFSRSSPRSSRDLGSSGGADRGGSSGFSGFDSDSGDKSHPLPRPNNTSALGIDQGVGIGSGSASVSSVSSCGSSDDHPSSHEQLQFGGYRWVSYLEVPCAKQSILTVKFLVKWRILMADNIKGYADTRIETRPRSPGPGSRGPTSPTSPLNPRFCGMSLESPTGKLDDGKGRCHKLPLPPPPSSPTSPSSLTTQSSLTSPSSLTTPSKWKKGKLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITVLSQLSHPNIVRYYGSEMGEESLSVYLEYVSGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPNGEVKLVDFGMAKHITNCTSMLSFKGSPYWMAPEVVMNTNGYSIAVDIWSLGCTVLEMATSKPPWNKYEGVAAIFKIGNSKDIPEIPDHLSNDAKHFVQLCLQRDPSARPSAAELLDHPFVQDAVTPRASDVNFSMDAFPFSFDGSQTPPLLDRQPNRKSISICDGDYVTNPIISSRASRSPRGNARLITSLPVSPCSSPLRSYGPAHQSCYLSPPHTSYMGLGQSGYNLNEYAYNTRPNALFTLDPSRDSSLLKVQTHGGSPRRPL 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 45087148 45091297 - Lag0012869.1 Lac1g2377 595948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2377 662 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 49 523 IPR050538 -
Lac1g2377 662 MobiDBLite consensus disorder prediction 239 259 - -
Lac1g2377 662 MobiDBLite consensus disorder prediction 178 259 - -
Lac1g2377 662 MobiDBLite consensus disorder prediction 50 64 - -
Lac1g2377 662 FunFam Mitogen-activated protein kinase kinase kinase 258 540 - -
Lac1g2377 662 Gene3D Transferase(Phosphotransferase) domain 1 257 533 - -
Lac1g2377 662 Pfam Protein kinase domain 261 516 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2377 662 SUPERFAMILY Protein kinase-like (PK-like) 258 605 IPR011009 -
Lac1g2377 662 CDD STKc_MEKK1_plant 259 516 - -
Lac1g2377 662 MobiDBLite consensus disorder prediction 1 133 - -
Lac1g2377 662 MobiDBLite consensus disorder prediction 90 132 - -
Lac1g2377 662 ProSitePatterns Protein kinases ATP-binding region signature. 266 289 IPR017441 GO:0005524(InterPro)
Lac1g2377 662 ProSiteProfiles Protein kinase domain profile. 260 516 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2377 662 SMART serkin_6 260 516 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2377 Lac-Chr1:45087148 Lac5g2947 Lac-Chr5:47502179 1.20E-118 dispersed
Lac1g2377 Lac-Chr1:45087148 Lac11g0043 Lac-Chr11:370305 3.10E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85910 PF00069 Pkinase 3.90E-73 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2377 K04421 - csv:101203907 899.427