Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2390 ATGGACGATCACGATATCCTTCATCATCACCACCACGTCCACGACCTCGATTCCATTTGGTCGTCGGTGTTTCCTTTTCAACCCTCCGATCCTCATCAAGAGCTTCCCACCTCCTCCACCCACTTGCTGATAAGCTACGGTACTCCGAGTTCTGGGGCAGGTGATGATCAGGAGGAGCCGGAAGAAGAGCTAGGTGCCATGAAGGAGATGATGTACAAGATCGCTGCGATGCAGCCAGTGGACATCGACCCTTCAACCATCCGAAAGCCCAAGCGACGAAACGTTCGAATTAGCGACGACCCACAAAGCATCGCCGCCCGTCTCCGACGAGAGAGGATCAGCGAGAAGATCAGAATTCTTCAGAGGCTTGTGCCCGGAGGAACAAAGATGGACACAGCTTCAATGCTAGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGCGACAAATACGGTTGCTGCAGTCGAGTCAGCCGGCGCAACAGCCGAGCACTGGCGGTGGCGCCGCGGCTGGAGGGTGGCCATTTACACTCCACAAGGCTAATGGTTCAACCTCCTCGTCCACTTCCATGGAGGCCACTCCCGCCATTACACCATCAGGATGGTGA 606 54.79 MDDHDILHHHHHVHDLDSIWSSVFPFQPSDPHQELPTSSTHLLISYGTPSSGAGDDQEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPAQQPSTGGGAAAGGWPFTLHKANGSTSSSTSMEATPAITPSGW 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 45228306 45228988 - Lag0012882.1 Lac1g2390 595961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2390 201 SMART finulus 103 152 IPR011598 GO:0046983(InterPro)
Lac1g2390 201 Pfam Helix-loop-helix DNA-binding domain 106 147 IPR011598 GO:0046983(InterPro)
Lac1g2390 201 MobiDBLite consensus disorder prediction 156 201 - -
Lac1g2390 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 156 IPR036638 GO:0046983(InterPro)
Lac1g2390 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 146 IPR011598 GO:0046983(InterPro)
Lac1g2390 201 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 8 176 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2390 201 FunFam BHLH transcription factor 100 164 - -
Lac1g2390 201 CDD bHLH_AtIND_like 98 155 - -
Lac1g2390 201 Gene3D - 100 164 IPR036638 GO:0046983(InterPro)
Lac1g2390 201 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0830 Lac-Chr11:8859741 Lac1g2390 Lac-Chr1:45228306 1.60E-24 dispersed
Lac12g0644 Lac-Chr12:6738790 Lac1g2390 Lac-Chr1:45228306 8.30E-09 dispersed
Lac1g2390 Lac-Chr1:45228306 Lac9g0990 Lac-Chr9:22954940 3.60E-34 dispersed
Lac1g2390 Lac-Chr1:45228306 Lac6g0294 Lac-Chr6:2407016 4.20E-35 transposed
Lac1g2390 Lac-Chr1:45228306 Lac2g0328 Lac-Chr2:2450276 4.20E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23284 PF00010 HLH 1.10E-06 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2390 - - - 0.0