Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2396 ATGGAGGAAAAGTGGTTGATTTTGAAATGGCTATGGGTTCCTCTTCTGCTTTTCCTCCTCCTCCTCCCAGCTGCTTCCGCTGAAGAAATTTTGTCATTCTCCTCTAGCACTAACAGCTTCTTCAATAACCGCAAAATTTCCCCATCCCGAAGTGCTTCTTCTGAAGAACCCACTTATGCCGTCATTTTCGACGCCGGTAGCTCCGGCAGCCGCGTTCATGTCTTCCATTTCAACTCCGATCTCGAGCTCCTTTACATTGGTGCAAACATCGAGGTCACTAAAAAGGTTAAACCAGGGCTGAGTTCGTACTCCGACGACCCACAGAAAGGGGCGGATTCTCTGCTTCCTCTCCTTAATTTAGCTGAAACATCTGTGCCCTTTGAGTTTCAACCCTCCACACCCATTGTTCTCGGGGCAACTGCAGGGTTGAGACTGTTGGATGCAGATAAAGCTGAGAAAATTCTGGAAGCGGTTGGGGAACTTTTTAAGACGAAAAGCACATTCAAGTACCGAGCTGATGAGGTTACTATTATTACTGGTAATCAGGAGGGCTCTTACATGTGGGCAACAATAAACTATTTGTTGAAGAATTTGGGGCAGCAATATTCAAAGACAGTGGGAGTGGTGGATCTTGGGGGTGCCTCTGTTCAAATGGCTTATGCTATCTCTGAAGATGCTGCAGCAAATGCTCCTAATTCTCCACAAAATGAGGATGGATATATTCAACAATTTTATTTCAAGGGAACCAAATATTCTCTCTATGTTCACAGTTATTTGCCTTATGGTGCACTAGCAGTCAGAGCTGAGATTTTGCAAGTAACCAAAAATGCATCCAACCCATGCATCTTAGCTGGTTTTCAAGGTACATACAAGTACAATGGAAAAGAATACAAAGCGTCAGCTTCTCCATTGGGGGCAAACTTGAAAGGGTGTGTGGGAGTGATTAAGAAGGCTATGAAAGTGAACAAACCCTGTAATTACAGCGGTTGCAGTTTCAACGGAATTTGGAACGGCGGCGGCGGCCGAGGCTTCGACAATCTCTACTTTGCTTCCTCCTTCTACGAAACTTCAGCTAAGACCGGTATCATCGACTCGAACAAAATGGTAGACAAGGCACGTGCAGCTGATTTCTTGAGAGTGGCAAAGCGGGCTTGCTCAACCAAATATGAGGATGCAAAAGCAACGTTCCCCGATTATTGGGAAGAAAGCTTGCCATACGTGTGCATGGATATTCTCTACGAGTATTCTCTCATTGTTTATGGCTTTGGTATTAGCCCCTATAAGAAGATATCATTGGTGAGTCAATTGGAGTATAAAGGTTCTTCTGTTGATGTTGCATGGCCCTTGGGCAATGCCCTAGCTGTTGTCTCAAAACATGATGAAGCTCTATTTCTCACTACCTAA 1404 44.73 MEEKWLILKWLWVPLLLFLLLLPAASAEEILSFSSSTNSFFNNRKISPSRSASSEEPTYAVIFDAGSSGSRVHVFHFNSDLELLYIGANIEVTKKVKPGLSSYSDDPQKGADSLLPLLNLAETSVPFEFQPSTPIVLGATAGLRLLDADKAEKILEAVGELFKTKSTFKYRADEVTIITGNQEGSYMWATINYLLKNLGQQYSKTVGVVDLGGASVQMAYAISEDAAANAPNSPQNEDGYIQQFYFKGTKYSLYVHSYLPYGALAVRAEILQVTKNASNPCILAGFQGTYKYNGKEYKASASPLGANLKGCVGVIKKAMKVNKPCNYSGCSFNGIWNGGGGRGFDNLYFASSFYETSAKTGIIDSNKMVDKARAADFLRVAKRACSTKYEDAKATFPDYWEESLPYVCMDILYEYSLIVYGFGISPYKKISLVSQLEYKGSSVDVAWPLGNALAVVSKHDEALFLTT 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 45329280 45339058 + Lag0012888.1 Lac1g2396 595967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2396 467 CDD NBD_sugar-kinase_HSP70_actin 61 220 - -
Lac1g2396 467 Gene3D - 59 453 - -
Lac1g2396 467 Gene3D Exopolyphosphatase. Domain 2 179 441 - -
Lac1g2396 467 Pfam GDA1/CD39 (nucleoside phosphatase) family 52 458 IPR000407 GO:0016787(InterPro)
Lac1g2396 467 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 6 456 IPR000407 GO:0016787(InterPro)
Lac1g2396 467 FunFam Apyrase 1 179 437 - -
Lac1g2396 467 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 178 193 IPR000407 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2396 Lac-Chr1:45329280 Lac2g1616 Lac-Chr2:14384491 3.10E-137 dispersed
Lac1g2396 Lac-Chr1:45329280 Lac6g1586 Lac-Chr6:21878414 6.60E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2396 K14641 - cit:102627845 468.388