Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2397 ATGGTGAGAGATGACTTGTGTATTACAATTCCGAGCGATTTCAGGTGTCCGATCTCGCTTGACGTGATGAAATCCCCTGTAAGTTTGTGCACCGGAGTCACTTATGATCGTTCCAGTATTCAGAAGTGGCTCGACAATGGAAACAATACTTGTCCGGCAACCATGCAGGTCCTTCACACCAAGGAGTTTGTTCCTAACCACAATCTCCACCGTCTCATTCAGATTTGGTCCGATTCCCTTCGCCACCGAGTCCACTCGCCCGATTCCTCCCCTCTTTCCGACTCTGCTCTCTCATCCGATCAACTTCTTGACCTCGTCAACCGCATGGAGGTCCATCAATCTCGCGCCGATTCGCTGCCGCGGCTTGTCTCGTTCGCCGCCGAATCGGCGGAGAATCGGAGGCTTCTCTGTCGAATCGACGGTCTCGTGCCGGTTCTTGTCGATCTTCTTGGCAATGTCGATGGTGGAGTCTTGGTCGAGCAGACGGTGAGGTTGTTGCATTTGATTTGGAGTGAGATAGAGGATAAGGAACGGTTTGTGAAGTCGATGTTGAAGAGCGATCGTAATTGTATTTGGTCTCTGCTTTTAATTCTGCGGAAAGGAACCGTGGAATTGAAAATCTGTTCGGCTAATTTGTTAGAGCATCTGGCAATCGACGCTGAAGCGAAGATTGTAATCGCGGAAACGGAGGGATTGATGCAGGAATTACTGAAATTAATCAACTCAGAGAACGATTCTACCCTAATCGAATCGGTTCTATCATGCCTAATTTCGATTTCAATGCCGAAACGGATAAAAATCAAATTAGTCCAACTGGGAGTGATAAAATCGGTAACGAAGCTCCTCTGGGAAGCGAACTCGAGTTGGAGCGTGTCGATGACGGAGAAGGTGCTGAAAGTGCTGGAGACGGCATCGACGGTGAGAGAAGGGAGGACGGAGATCGGAGAGGACTCGGTGTGCGTGGGGGCGATAGTACAGAAGGTGCTGAAGGTGTCGAACACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTGTGCTATCTGTTTAGAGACGAGAAGGCGGCGGAGGCGTTGACTCAGGCGAACGGATTGACGAAGATATTGCTGTTAATGCAGAGCAATTGCTCGCCGGCGGTGAGGCAGATGGCGAGAGATTTGTTGAAGATTTTTCGGATCAATTCGAAATCGTGCCTATCGAGTTACGATACGAAAACTACGCATATCATGCCCTGTTGA 1239 50.12 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLRHRVHSPDSSPLSDSALSSDQLLDLVNRMEVHQSRADSLPRLVSFAAESAENRRLLCRIDGLVPVLVDLLGNVDGGVLVEQTVRLLHLIWSEIEDKERFVKSMLKSDRNCIWSLLLILRKGTVELKICSANLLEHLAIDAEAKIVIAETEGLMQELLKLINSENDSTLIESVLSCLISISMPKRIKIKLVQLGVIKSVTKLLWEANSSWSVSMTEKVLKVLETASTVREGRTEIGEDSVCVGAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTQANGLTKILLLMQSNCSPAVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 45362914 45364152 - Lag0012889.1 Lac1g2397 595968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2397 412 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac1g2397 412 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Lac1g2397 412 SUPERFAMILY ARM repeat 122 394 IPR016024 -
Lac1g2397 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 82 IPR013083 -
Lac1g2397 412 CDD RING-Ubox_PUB 11 63 IPR045210 -
Lac1g2397 412 PANTHER WDSAM1 PROTEIN 7 411 IPR045185 GO:0061630(InterPro)
Lac1g2397 412 Gene3D - 101 404 IPR011989 -
Lac1g2397 412 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac1g2397 412 Pfam U-box domain 10 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac1g2397 412 SUPERFAMILY RING/U-box 6 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2397 Lac-Chr1:45362914 Lac9g0248 Lac-Chr9:3993895 1.50E-114 dispersed
Lac1g2397 Lac-Chr1:45362914 Lac9g2738 Lac-Chr9:45540783 3.00E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2397 - - - 0.0