Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2407 CGACTCACACTACTCAGCCACACCTTCTTCTTTGGAGGTTGGCTTCTTCTCTCTCTTTATTCCCAGTTTTTGAAAAAGATGGCAGACGCCGAGGATATTCAGCCACTTGTTTGCGACAATGGAACTGGAATGGTGAAGGCTGGTTTTGCTGGTGATGATGCTCCCAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCCTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACTTTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCATCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCCATGTACGTCGCCATCCAGGCCGTTCTGTCTCTCTATGCTAGTGGACGTACAACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTATGAGGGTTACGCCCTCCCTCATGCAATTCTCCGTTTGGACCTTGCTGGTCGTGACCTCACTGATGCTCTAATGAAGATCCTCACTGAAAGAGGTTACATGTTCACCACTACTGCAGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTCGAGACTGCAAAGAGCAGTTCTTCTATTGAGAAGAACTATGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATTGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTGGATATCAGAAAGGACCTTTACGGAAACATCGTCCTGAGTGGTGGTTCAACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAAATCACAGCCCTCGCTCCCAGCAGCATGAAGATCAAGGTTGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGATCTATCCTTGCATCTCTAAGCACCTTCCAGCAGATGTGGATCTCAAAGGGTGAATATGACGAATCGGGCCCATCGATTGTCCACAGGAAGTGCTTCTGA 1212 47.61 RLTLLSHTFFFGGWLLLSLYSQFLKKMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 45486567 45489024 + Lag0012899.1 Lac1g2407 595978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2407 403 SMART actin_3 33 403 IPR004000 -
Lac1g2407 403 FunFam Actin, alpha skeletal muscle 29 204 - -
Lac1g2407 403 PANTHER ACTIN 34 395 IPR004000 -
Lac1g2407 403 FunFam Putative actin-related protein 5 367 395 - -
Lac1g2407 403 ProSitePatterns Actins and actin-related proteins signature. 132 144 IPR020902 -
Lac1g2407 403 PRINTS Actin signature 143 156 IPR004000 -
Lac1g2407 403 PRINTS Actin signature 54 63 IPR004000 -
Lac1g2407 403 PRINTS Actin signature 89 111 IPR004000 -
Lac1g2407 403 PRINTS Actin signature 264 280 IPR004000 -
Lac1g2407 403 PRINTS Actin signature 168 187 IPR004000 -
Lac1g2407 403 PRINTS Actin signature 77 88 IPR004000 -
Lac1g2407 403 FunFam Major actin 287 366 - -
Lac1g2407 403 Gene3D - 36 397 - -
Lac1g2407 403 SUPERFAMILY Actin-like ATPase domain 32 181 IPR043129 -
Lac1g2407 403 ProSitePatterns Actins signature 2. 384 392 IPR004001 -
Lac1g2407 403 FunFam Actin, muscle 208 299 - -
Lac1g2407 403 CDD NBD_sugar-kinase_HSP70_actin 36 209 - -
Lac1g2407 403 SUPERFAMILY Actin-like ATPase domain 175 403 IPR043129 -
Lac1g2407 403 ProSitePatterns Actins signature 1. 81 91 IPR004001 -
Lac1g2407 403 Gene3D Actin; Chain A, domain 4 208 299 - -
Lac1g2407 403 Pfam Actin 31 403 IPR004000 -
Lac1g2407 403 Gene3D - 166 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2407 K10355 - - csv:101215469 758.059
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0981 Lac-Chr13:8164917 Lac1g2407 Lac-Chr1:45486567 7.20E-156 dispersed
Lac1g2407 Lac-Chr1:45486567 Lac8g2518 Lac-Chr8:42999092 5.60E-204 dispersed
Lac10g2624 Lac-Chr10:40365596 Lac1g2407 Lac-Chr1:45486567 7.30E-214 transposed
Lac12g0288 Lac-Chr12:3204737 Lac1g2407 Lac-Chr1:45486567 2.40E-212 transposed
Lac13g0112 Lac-Chr13:769239 Lac1g2407 Lac-Chr1:45486567 7.30E-59 transposed
Lac3g0489 Lac-Chr3:3733944 Lac1g2407 Lac-Chr1:45486567 3.50E-74 transposed
Lac8g2989 Lac-Chr8:46738864 Lac1g2407 Lac-Chr1:45486567 2.00E-97 transposed
Lac9g0271 Lac-Chr9:4360106 Lac1g2407 Lac-Chr1:45486567 3.90E-36 transposed
Lac9g0272 Lac-Chr9:4360476 Lac1g2407 Lac-Chr1:45486567 1.80E-135 transposed
Lac1g2042 Lac-Chr1:41970900 Lac1g2407 Lac-Chr1:45486567 4.00E-200 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 9.6e-214 740.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT2G37620 95.5 3.6e-213 738.0
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 3.1e-212 734.9
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT2G37620 93.1 1.5e-203 706.1
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT2G37620 96.1 1.3e-199 693.0
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT2G37620 86.7 5.1e-199 691.0
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT2G37620 86.6 7.7e-155 544.3
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT2G37620 95.0 2.0e-131 466.5
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 1.3e-213 739.6
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.3e-210 729.6
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT5G59370 94.4 4.9e-210 727.6
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT5G59370 94.2 4.8e-205 711.1
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT5G59370 96.3 1.9e-198 689.1
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT5G59370 87.2 3.3e-198 688.3
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT5G59370 87.5 2.0e-155 546.2
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT5G59370 94.2 1.3e-130 463.8
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.6e-213 738.0
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.8e-211 730.7
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G46520 94.7 2.2e-210 728.8
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G46520 94.4 2.1e-205 712.2
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G46520 96.1 5.6e-198 687.6
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G46520 86.9 9.6e-198 686.8
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G46520 87.9 9.1e-156 547.4
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT3G46520 94.6 4.6e-131 465.3
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 6.6e-215 743.8
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G12110 95.5 1.4e-212 736.1
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 4.0e-212 734.6
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G12110 93.4 2.4e-204 708.8
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G12110 96.3 1.0e-199 693.3
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G12110 87.2 1.8e-199 692.6
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G12110 87.2 7.0e-156 547.7
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT3G12110 94.2 2.3e-130 463.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G18780 93.1 7.1e-209 723.8
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.7e-207 719.2
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 2.3e-207 718.8
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G18780 89.7 7.9e-200 693.7
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G18780 92.4 2.9e-194 675.2
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G18780 82.2 7.9e-192 667.2
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G18780 83.8 4.0e-151 531.9
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT3G18780 90.8 2.3e-127 453.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT1G49240 93.4 2.4e-209 725.3
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 6.0e-208 720.7
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 7.9e-208 720.3
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT1G49240 89.9 2.7e-200 695.3
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT1G49240 92.1 6.5e-194 674.1
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT1G49240 82.5 2.7e-192 668.7
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT1G49240 84.1 1.4e-151 533.5
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT1G49240 91.3 8.0e-128 454.5
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.3e-214 741.1
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 8.1e-213 736.9
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT5G09810 92.8 4.5e-203 704.5
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT5G09810 96.1 5.1e-199 691.0
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT5G09810 86.4 4.3e-198 688.0
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT5G09810 86.6 7.7e-155 544.3
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT5G09810 97.5 2.9e-133 472.6
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 1.3e-56 216.5
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT2G19760 77.1 1.7e-56 216.1
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT2G19760 74.0 6.4e-56 214.2
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT2G19760 72.5 2.3e-53 205.7
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 5.1e-53 204.5
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 2.2e-56 215.7
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT4G29350 77.9 2.9e-56 215.3
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT4G29350 74.8 2.4e-55 212.2
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT4G29350 71.8 8.6e-53 203.8
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT4G29350 71.8 1.9e-52 202.6
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 2.2e-64 242.3
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT4G29340 75.4 3.1e-58 221.9
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT4G29340 75.4 4.5e-57 218.0
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT4G29340 71.6 2.6e-52 202.2
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT4G29340 69.4 7.5e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276