Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2407 CGACTCACACTACTCAGCCACACCTTCTTCTTTGGAGGTTGGCTTCTTCTCTCTCTTTATTCCCAGTTTTTGAAAAAGATGGCAGACGCCGAGGATATTCAGCCACTTGTTTGCGACAATGGAACTGGAATGGTGAAGGCTGGTTTTGCTGGTGATGATGCTCCCAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCCTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACTTTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCATCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCCATGTACGTCGCCATCCAGGCCGTTCTGTCTCTCTATGCTAGTGGACGTACAACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTATGAGGGTTACGCCCTCCCTCATGCAATTCTCCGTTTGGACCTTGCTGGTCGTGACCTCACTGATGCTCTAATGAAGATCCTCACTGAAAGAGGTTACATGTTCACCACTACTGCAGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTCGAGACTGCAAAGAGCAGTTCTTCTATTGAGAAGAACTATGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATTGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTGGATATCAGAAAGGACCTTTACGGAAACATCGTCCTGAGTGGTGGTTCAACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAAATCACAGCCCTCGCTCCCAGCAGCATGAAGATCAAGGTTGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGATCTATCCTTGCATCTCTAAGCACCTTCCAGCAGATGTGGATCTCAAAGGGTGAATATGACGAATCGGGCCCATCGATTGTCCACAGGAAGTGCTTCTGA 1212 47.61 RLTLLSHTFFFGGWLLLSLYSQFLKKMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 45486567 45489024 + Lag0012899.1 Lac1g2407 595978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2407 403 SMART actin_3 33 403 IPR004000 -
Lac1g2407 403 FunFam Actin, alpha skeletal muscle 29 204 - -
Lac1g2407 403 PANTHER ACTIN 34 395 IPR004000 -
Lac1g2407 403 FunFam Putative actin-related protein 5 367 395 - -
Lac1g2407 403 ProSitePatterns Actins and actin-related proteins signature. 132 144 IPR020902 -
Lac1g2407 403 PRINTS Actin signature 143 156 IPR004000 -
Lac1g2407 403 PRINTS Actin signature 54 63 IPR004000 -
Lac1g2407 403 PRINTS Actin signature 89 111 IPR004000 -
Lac1g2407 403 PRINTS Actin signature 264 280 IPR004000 -
Lac1g2407 403 PRINTS Actin signature 168 187 IPR004000 -
Lac1g2407 403 PRINTS Actin signature 77 88 IPR004000 -
Lac1g2407 403 FunFam Major actin 287 366 - -
Lac1g2407 403 Gene3D - 36 397 - -
Lac1g2407 403 SUPERFAMILY Actin-like ATPase domain 32 181 IPR043129 -
Lac1g2407 403 ProSitePatterns Actins signature 2. 384 392 IPR004001 -
Lac1g2407 403 FunFam Actin, muscle 208 299 - -
Lac1g2407 403 CDD NBD_sugar-kinase_HSP70_actin 36 209 - -
Lac1g2407 403 SUPERFAMILY Actin-like ATPase domain 175 403 IPR043129 -
Lac1g2407 403 ProSitePatterns Actins signature 1. 81 91 IPR004001 -
Lac1g2407 403 Gene3D Actin; Chain A, domain 4 208 299 - -
Lac1g2407 403 Pfam Actin 31 403 IPR004000 -
Lac1g2407 403 Gene3D - 166 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0981 Lac-Chr13:8164917 Lac1g2407 Lac-Chr1:45486567 7.20E-156 dispersed
Lac1g2407 Lac-Chr1:45486567 Lac8g2518 Lac-Chr8:42999092 5.60E-204 dispersed
Lac10g2624 Lac-Chr10:40365596 Lac1g2407 Lac-Chr1:45486567 7.30E-214 transposed
Lac12g0288 Lac-Chr12:3204737 Lac1g2407 Lac-Chr1:45486567 2.40E-212 transposed
Lac13g0112 Lac-Chr13:769239 Lac1g2407 Lac-Chr1:45486567 7.30E-59 transposed
Lac3g0489 Lac-Chr3:3733944 Lac1g2407 Lac-Chr1:45486567 3.50E-74 transposed
Lac8g2989 Lac-Chr8:46738864 Lac1g2407 Lac-Chr1:45486567 2.00E-97 transposed
Lac9g0271 Lac-Chr9:4360106 Lac1g2407 Lac-Chr1:45486567 3.90E-36 transposed
Lac9g0272 Lac-Chr9:4360476 Lac1g2407 Lac-Chr1:45486567 1.80E-135 transposed
Lac1g2042 Lac-Chr1:41970900 Lac1g2407 Lac-Chr1:45486567 4.00E-200 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2407 K10355 - csv:101215469 758.059