Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g2418 | ATGGACACAGCTGGTAGACTCATTGCTGGGTCTCACAATAGAAACGAGTTTGTTCTGATCAATGCAGATGAGACTGCTCGGATCAAGTCTGTGAAGGAATTGAGTGGGCAAACATGTCAGATTTGTGGAGATGAGGTAGAGTTAACTGTTGAAGGAGAGCTCTTTGTTGCCTGTAATGAATGTGCTTTCCCAGTTTGTAGACCTTGTTATGAGTATGAGAGAAGAGAGGGAAATCAAGCTTGCCCACAGTGTAAAACCAGATACAAGCGCATTAAAGGTAGTCCTAGGGTTGAAGGTGATGAGGATGAAGACGATATTGATGATTTGGATAATGAATTTGACTATGGGAACCTTGATGCTTTGGGCCCTTATGCTGCAGAGGCATCGTTTGCTTCACACCTTAACACTGGTCGTGGTTCCCACCCTAATGCATCTCATATCCCTGGACAGTCGGAGCATGAACCTTCTCCCCTTGGTTCCGAAATCCCTCTCCTGACATATGGCGAGGAGGATTATGAGATATCTTCTGATCAACATGCTCTTGTACCCCATTTTATGGGTCATGGGAACAGAGTCCACCCAATGCCTTACCCTGATCCATCAATACCTTCTCAACCTAGACCAATGGTTCCCCAAAAAGATATTGCGGTGTATGGTTATGGGAGTGTGGCATGGAAGGACAGAATGGAGGATTGGAAAAAGAAGCAAAATGATAAACTTCAAGTGGTGAAGCACCAAGGGGTTGATGATGGTGGAAATGATATCGATGATCCTGATTTGCCCATGATGGATGAAGCTAGGCAACCACTATCAAGGAAGTTGCCCATCTCTTCAAGCAGGATTAATCCATACAGATTAATCATCTTGCTTCGTCTTGTTATTCTTGGCCTGTTTTTCCATTATAGAATTCTTCATCCGGTTAAAGATGCCTATGGCTTGTGGTTGACTTCAGTAATATGTGAAATATGGTTTGCTGTATCGTGGATTCTGGATCAGTTCCCAAAATGGTATCCAATTGAAAGGGAAACTTATCTTGATAGACTGTCACTGAGGTATGAAAAAGAAGGGAAACCTTCTGAATTAGCAAGTGTGGACGTATTTGTCAGTACTGTTGATCCACTGAAAGAACCTCCACTGATCACTGCCAACACAGTACTTTCCATCCTTGCGGTTGACTATCCAGTTGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCAGCCATGTTAACATTTGAAGCCCTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTGTAAGAAATTCAATATCGAGCCTCGTGCCCCAGAATTTTACTTCTCTCAGAAGATTGATTATTTGAAGAACAAGGTCCATCCAGCATTTGTCAGGGAAAGGCGGGCAATGAAGAGAGAATACGAAGAATTTAAGGTTAGGATAAATGCTTTGGTCTCAATGGCTCAAAAGGTTCCCGAGGACGGCTGGACAATGCAAGATGGTACTCCATGGCCTGGGAACAATGTTCGAGACCACCCTGGCATGATTCAGGTTTTCCTTGGCCAGAGTGGAGTTTGTGATGTTGAAGGAAATGAGCTACCACGTCTGGTTTATGTCTCTCGTGAAAAGCGGCCAGGGTTCGAACATCACAAGAAGGCTGGGGCCATGAATGCACTGGTTCGTGTCTCGGCAGTTCTGTCAAATGCTCCTTATCTTCTTAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCCATGTGTTTCATGATGGATCCTACGTCAGGGAAGAAAGTTTGTTATGTGCAGTTCCCTCAAAGATTTGATGGGATTGATCGACATGATCGATATTCAAACCGGAATGTTGTGTTCTTTGATATTAACATGAAAGGATTAGACGGTCTACAAGGCCCGATATATGTTGGTACGGGTTGTGTTTTCAGGAGGGTTGCCCTCTATGGATATGATGCTCCGGCCAAGAAGAAACCCCCAAGCAAAACATGCAACTGCTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCTAGAAAGAACAAGAAAGGAAAGGCCAAGAATGAGAAAAAGAAGAAGACAAAGCACAGAGAAGCCTCAAAGCAGATCCACGCACTTGAGAATATCGAGGAGGGTATCGAAGAACTAAGCATAGAGAAAATGAATGTGTCTCAAATAAAGTTGGCAAAAAAATTCGGGCAATCTCCAGTGTTTGTCGCCTCGACCCTGTTGGAAAATGGAGGAGTTCCTCACGATGTGAGTGCTGCATCACTCCTAAGAGAAGCCATCCAAGTCATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGGTGGATTTATGGTTCTGTGACTGAAGATATCTTGACTGGATTTAAAATGCACTGTCACGGTTGGCGGTCCGTATACTGTATTCCCAAGAGACCTGCGTTTAAAGGGTCAGCTCCAATCAATCTATCAGATCGTCTACACCAAGTTTTGCGGTGGGCTCTAGGATCTGTTGAGATATTCTTAAGCAGACACTGTCCTATCTGGTATGGCTATGGAGGCGGTTTGAAATGGTTGGAACGATTTTCGTACATAAACTCAGTGGTCTATCCGTGGACGTCGATTCCATTGCTTGTTTACTGTAGTCTTCCAGCTATCTGTCTGCTCACTGGAAAATTTATTGTTCCTGAGATAAGCAACTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCGACCGGTATCCTTGAGATGCAGTGGGGTGGTGTCGGGATTGACGACTGGTGGAGAAACGAGCAGTTCTGGGTTATTGGAGGCGTTTCTTCGCATCTTTTTGCTCTCTTCCAAGGTCTTCTCAAGGTTTTGGCTGGTGTCAGCACCAACTTCACAGTTACATCCAAAGCAGCTGATGATGGTGAATTTTCAGAGCTCTATGTCTTCAAGTGGACATCATTGTTAATACCTCCCACGACCTTGTTGATCATAAACATTGTCGGTGTGATCGTCGGGATCTCAGACGCCATCAATAATGGGTACGATTCCTGGGGTCCTCTTTTCGGAAGGCTATTTTTCGCTCTTTGGGTGATCATCCACCTCTACCCCTTCTTGAAGGGATTGTTAGGGAAACAAGACCGATTACCGACGATCATTGTTGTTTGGTCAATTCTTTTAGCCTCAATCTTAACATTACTTTGGGTAAGGATCAACCCATTTGTATCCAAAGATGGTCCTGTTTTAGAAGTTTGCGGATTGAATTGCGATTAG | 3276 | 43.93 | MDTAGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICGDEVELTVEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDDIDDLDNEFDYGNLDALGPYAAEASFASHLNTGRGSHPNASHIPGQSEHEPSPLGSEIPLLTYGEEDYEISSDQHALVPHFMGHGNRVHPMPYPDPSIPSQPRPMVPQKDIAVYGYGSVAWKDRMEDWKKKQNDKLQVVKHQGVDDGGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFHYRILHPVKDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRINALVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVCDVEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRVALYGYDAPAKKKPPSKTCNCLPKWCCLCCGSRKNKKGKAKNEKKKKTKHREASKQIHALENIEEGIEELSIEKMNVSQIKLAKKFGQSPVFVASTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYVFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRLPTIIVVWSILLASILTLLWVRINPFVSKDGPVLEVCGLNCD | 1091 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 45617746 | 45623443 | + | Lag0012910.1 | Lac1g2418 | 595989 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g2418 | 1091 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 274 | 1060 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
| Lac1g2418 | 1091 | MobiDBLite | consensus disorder prediction | 133 | 150 | - | - | |
| Lac1g2418 | 1091 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 378 | 909 | IPR029044 | - | |
| Lac1g2418 | 1091 | Pfam | Cellulose synthase | 364 | 1079 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
| Lac1g2418 | 1091 | MobiDBLite | consensus disorder prediction | 682 | 701 | - | - | |
| Lac1g2418 | 1091 | MobiDBLite | consensus disorder prediction | 133 | 159 | - | - | |
| Lac1g2418 | 1091 | FunFam | Cellulose synthase | 481 | 655 | - | - | |
| Lac1g2418 | 1091 | Pfam | Zinc-binding RING-finger | 29 | 105 | IPR027934 | - | |
| Lac1g2418 | 1091 | CDD | mRING-HC-C4C4_CesA | 37 | 87 | - | - | |
| Lac1g2418 | 1091 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 112 | IPR013083 | - | |
| Lac1g2418 | 1091 | FunFam | Cellulose synthase | 21 | 112 | - | - | |
| Lac1g2418 | 1091 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 520 | 656 | IPR029044 | - | |
| Lac1g2418 | 1091 | SUPERFAMILY | RING/U-box | 25 | 111 | - | - | |
| Lac1g2418 | 1091 | ProSiteProfiles | Zinc finger RING-type profile. | 39 | 85 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g1247 | Lac-Chr1:31898198 | Lac1g2418 | Lac-Chr1:45617746 | 0.00E+00 | dispersed | |
| Lac1g2418 | Lac-Chr1:45617746 | Lac3g0229 | Lac-Chr3:1609822 | 0.00E+00 | dispersed | |
| Lac1g2418 | Lac-Chr1:45617746 | Lac2g2618 | Lac-Chr2:39985040 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac1g2418 | K10999 | - | csv:101211094 | 2112.42 |