Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2432 ATGATACCCTTTTGCCCATCTTCTTCAAAATCCCTTCTCAGCCTCTTTTTCTTCCTTTTCTCTCTCACTCTTCTCTCGCTCTCTGCTTTCTCTCTCACGCCTTCGCCTTCGCCTTCACACAGAGATACCCAGCAACTGATTTCCTTCAAATCTTCGCTTCCCAATCCGACCGTTCTTCAAAACTGGGTTTCCAATGGCGACGCGTGTTCGTTTCCCGGCATTACTTGCAAGGAAACCAGAGTTTCCGCCATAGACTTGAGCTTCTTGTCTCTGAGCTCTAATTTCAGCCATGTGTTCCCTTTGCTTGCGGGGCTCGACCATTTGGAATCGCTTTCTCTCAAATCTACTAACCTCACTGGCTCCATTTCTCTGCCCTCTGGATTCAAGTGTAGCCCTCTGCTTTCGTCTGTAGATCTGTCCCTCAATGGCTTGTTTGGCTCGGTTTCTGATGTCTCTAACTTGGGGTTTTGCTCCAATGTCAAGTCGCTTAATCTGTCCTTTAACTCTTTTGATTTTCCCCCGAAAGACTCCGCCCCCGGATTGAAGCTCGATTTGCAGGTTCTCGATCTTTCTTCCAACCGGATTGTTGGGTCGAAGTTGGTTCCGTGGATTTTCTCTGCTGGGTGTGGTAATTTGCAGTACTTGGCATTGAAGGGCAACAAAATCAGCGGCGAGATTAATCTCTCCGCCTGTAATAAACTCGAGCATTTGGATATTTCCGGCAACAATTTCTCTGTGGGTATTCCGCCGTTGGGGGATTGCTCTGTTTTGGAGTATCTTGATATCTCCGGCAATAAGTTCACCGGCGACGTTGGACATGCTCTGTCGTCTTGTCAGCAACTCAGCTTCTTGAATCTCTCGAGCAACCAGTTTGGAGGTCCAATCCCTTCATTTGCATCGTCGAATTTGTGGTTTCTTTCGCTTGCTAACAACGATTTCCAAGGGGAGATTCCTGTAAGTATTGCAGATTCGTGTTCTAGTTTGGTTGAGCTCGATCTTTCTTCTAATAGTTTGATTGGGGCTGTGCCTGCTGCTTTGGGGTCTTGTTCTTCGTTGGAAACTTTGGACATTTCAAAAAATAACCTCTCTGGTGAGCTCCCCATTGCTGTTTTTGCTAAAATGAGTAATCTCAAGAGACTCTCTGTCTCGGATAACAAGTTTTTTGGGGTTTTGTCGGATTCTCTGTCTCAACTCACCACTTTGAACTCTTTGGATCTGAGTTCTAATAACTTTTCTGGGTCGATTCCGGCCGGGCTCTGTAACGACCCTAATAGCAGCTTGAAAGAATTGTTTCTTCAGAACAATTGGTTGACGGGTCGAATCCCTGCAACTATTAGTAACTGTTCTCAGCTGGTTTCTCTGGATTTGAGCTTCAACTTTCTGAGTGGGACGATCCCTTCCAGCTTGGGATCGCTTTCTAAGCTTAAGAACTTGATTATGTGGTTGAATCAGCTGGAGGGGGAGATTCCATCGGATTTTAAGAACTTTCAGGGGCTTGAGAATCTGATCCTGGATTTCAATGAGCTCACCGGGACGATTCCTTCTGGGTTAAGCAATTGCACCAACTTGAACTGGATTTCGTTGTCGAACAACCGGTTGAGCGGAGAGATTCCCACCTGGATTGGGCACCTGCCGAACCTTGCCATCCTTAAGCTCAGCAACAACTCGTTCTACGGTAGGATTCCTCCGGAGTTGGGCGATTGTCGGAGCTTGATCTGGCTTGACCTCAATACCAATAACTTGAATGGAACGATCCCTCTGGAGCTGTTTCGTCAATCGGGTAACATTGCTGTTAACTTTATCACCGGGAAGTCTTATGCTTATATTAAGAATGATGGTAGTAAGCAGTGCCATGGAGCTGGAAATTTGCTTGAGTTTGCTGGGATAAGACAGGAACAAGTGAACAGGATTTCAAGCAAGAGTCCCTGCAATTTCACCAGGGTTTATAAGGGAATGACTCAGCCGACGTTTAACCATAACGGGTCGATGATCTTTCTCGATCTTTCGCACAATATGTTGTCTGGTAGTATTCCCAAGGAGATTGGTTCTACAAACTATCTCTACATATTGGATTTAGGCCATAACAGGCTCTCCGGAGCCATTCCGCAGGAGCTCGGCGACTTGACGAAACTGAACATTCTTGATCTCTCAAGTAATGAGCTTGAAGGATCAATTCCATTGTCTTTGACTGGACTTTCCTCCCTCATGGAGATTGATCTATCAAACAATCATCTCAACGGTTCAATACCCGAATCAGCTCAGTTCGAAACGTTCCCGGCATCTGGTTTTGCCAATAATTCTGGTCTCTGTGGGTATCCTCTCCCTACATGTGGGGTTGATTCAGCAGCTAATGCAAATGCTCAGCATCAAAGATCTCATAGGAAACAGGCATCGCTTGCAGGGAGCGTCGCAATGGGGTTACTCTTCTCCCTCTTCTGTATATTCGGTCTGATTATAGTCGTTATCGAGATGAGGAAGAGAAGGAAGAAGAAGGATTCTACTCTTGATTCGTATGTTGACAGTCGTTCCCAATCAGGCACGACGACGGCCGTTAACTGGAAGCTAACCAGCACCCGTGAAGCATTGAGTATCAATCTTGCGACATTCGAAAAGCCACTTCGGAAGCTGACATTTGCAGATCTTCTCGACGCAACGAATGGCTTCCACAATGATAGCCTGATTGGTAAAGGGGGTTTCGGCGACGTATACAAGGCTCAATTGAAGGATGGAAGCATTGTAGCAATCAAGAAGCTGATTCATGTCAGTGGACAGGGTGATAGGGAGTTCACCGCAGAAATGGAAACCATTGGCAAAATCAAACACCGAAACCTGGTACCTCTTCTGGGCTACTGCAAAGTCGGAGAAGAACGGCTTCTCGTGTACGAGTACATGAAATACGGAAGCTTGGAAGACGTTTTACACGACCAGAAGAAGGGCGGGATCAAACTGAATTGGGCTGCAAGAAGGAAGATTGCCATTGGAGCTGCAAGGGGACTGGCTTTCCTTCACCACAATTGCATCCCTCACATCATTCACAGGGACATGAAATCAAGCAATGTCTTATTGGATGAGAACTTGGAAGCCAGAGTCTCAGATTTTGGAATGGCAAGGCTGATGAGTGCCATGGACACCCATTTGAGTGTCAGCACATTAGCTGGAACACCCGGTTACGTCCCTCCCGAATATTACCAGAGCTTCCGATGTTCGACAAAAGGCGATGTTTACAGTTACGGTGTCGTCATGCTCGAGCTCCTAACAGGAAAGCGACCTACAGACTCTGCCGATTTTGGGGACAACAATCTTGTCGGATGGGTTAAACAACACGCCAAGTTGGACCTAACCGAAGTTTTCGACCCCGAGCTCATGAAGGAGGATCCAAGCCTCAAGATAGAGCTTTTAGAACACTTGAAGGTAGCTGTTGCTTGCTTAGATGATAGGTCATGGCGGCGTCCAACGATGATCCAAGTGATGACGATGTTCAAAGAAATCCAAGCAGGGTCAGGGATGGATTCGCAATCTACAATCGGAACCGACAACGGAGGATTCAGCGTCGACATGGTAGACATGAGCTTAAAGGAAGTACCAGAAGGCAAGTGA 3597 46.65 MIPFCPSSSKSLLSLFFFLFSLTLLSLSAFSLTPSPSPSHRDTQQLISFKSSLPNPTVLQNWVSNGDACSFPGITCKETRVSAIDLSFLSLSSNFSHVFPLLAGLDHLESLSLKSTNLTGSISLPSGFKCSPLLSSVDLSLNGLFGSVSDVSNLGFCSNVKSLNLSFNSFDFPPKDSAPGLKLDLQVLDLSSNRIVGSKLVPWIFSAGCGNLQYLALKGNKISGEINLSACNKLEHLDISGNNFSVGIPPLGDCSVLEYLDISGNKFTGDVGHALSSCQQLSFLNLSSNQFGGPIPSFASSNLWFLSLANNDFQGEIPVSIADSCSSLVELDLSSNSLIGAVPAALGSCSSLETLDISKNNLSGELPIAVFAKMSNLKRLSVSDNKFFGVLSDSLSQLTTLNSLDLSSNNFSGSIPAGLCNDPNSSLKELFLQNNWLTGRIPATISNCSQLVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSDFKNFQGLENLILDFNELTGTIPSGLSNCTNLNWISLSNNRLSGEIPTWIGHLPNLAILKLSNNSFYGRIPPELGDCRSLIWLDLNTNNLNGTIPLELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLLEFAGIRQEQVNRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLSGSIPKEIGSTNYLYILDLGHNRLSGAIPQELGDLTKLNILDLSSNELEGSIPLSLTGLSSLMEIDLSNNHLNGSIPESAQFETFPASGFANNSGLCGYPLPTCGVDSAANANAQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVIEMRKRRKKKDSTLDSYVDSRSQSGTTTAVNWKLTSTREALSINLATFEKPLRKLTFADLLDATNGFHNDSLIGKGGFGDVYKAQLKDGSIVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKGGIKLNWAARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVMLELLTGKRPTDSADFGDNNLVGWVKQHAKLDLTEVFDPELMKEDPSLKIELLEHLKVAVACLDDRSWRRPTMIQVMTMFKEIQAGSGMDSQSTIGTDNGGFSVDMVDMSLKEVPEGK 1198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 45792759 45796355 + Lag0012924.1 Lac1g2432 596003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2432 1198 FunFam Serine/threonine-protein kinase BRI1-like 1 601 658 - -
Lac1g2432 1198 Gene3D - 599 659 - -
Lac1g2432 1198 SUPERFAMILY RNI-like 273 587 - -
Lac1g2432 1198 Gene3D Ribonuclease Inhibitor 46 777 IPR032675 -
Lac1g2432 1198 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 184 423 - -
Lac1g2432 1198 Pfam Brassinosteroid receptor island domain 594 658 IPR045381 -
Lac1g2432 1198 Gene3D Transferase(Phosphotransferase) domain 1 964 1165 - -
Lac1g2432 1198 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 655 1163 IPR050647 -
Lac1g2432 1198 Pfam Leucine rich repeat N-terminal domain 41 76 IPR013210 -
Lac1g2432 1198 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1010 1022 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2432 1198 Pfam Protein kinase domain 888 1157 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2432 1198 FunFam serine/threonine-protein kinase BRI1-like 2 849 963 - -
Lac1g2432 1198 SUPERFAMILY L domain-like 40 298 - -
Lac1g2432 1198 ProSiteProfiles Protein kinase domain profile. 888 1163 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2432 1198 Pfam Leucine rich repeat 687 745 IPR001611 GO:0005515(InterPro)
Lac1g2432 1198 Pfam Leucine rich repeat 498 556 IPR001611 GO:0005515(InterPro)
Lac1g2432 1198 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 424 600 - -
Lac1g2432 1198 CDD STKc_IRAK 894 1163 - -
Lac1g2432 1198 SMART LRR_typ_2 544 568 IPR003591 -
Lac1g2432 1198 SMART LRR_typ_2 325 349 IPR003591 -
Lac1g2432 1198 SMART LRR_typ_2 398 422 IPR003591 -
Lac1g2432 1198 SMART LRR_typ_2 708 731 IPR003591 -
Lac1g2432 1198 SMART LRR_typ_2 732 755 IPR003591 -
Lac1g2432 1198 SMART LRR_typ_2 496 520 IPR003591 -
Lac1g2432 1198 SMART LRR_typ_2 350 373 IPR003591 -
Lac1g2432 1198 SMART LRR_typ_2 374 397 IPR003591 -
Lac1g2432 1198 FunFam Brassinosteroid LRR receptor kinase 964 1165 - -
Lac1g2432 1198 Gene3D Phosphorylase Kinase; domain 1 848 963 - -
Lac1g2432 1198 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 655 777 - -
Lac1g2432 1198 SMART serkin_6 888 1160 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2432 1198 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Lac1g2432 1198 Pfam Leucine Rich Repeat 426 448 IPR001611 GO:0005515(InterPro)
Lac1g2432 1198 Pfam Leucine Rich Repeat 327 349 IPR001611 GO:0005515(InterPro)
Lac1g2432 1198 Pfam Leucine Rich Repeat 281 298 IPR001611 GO:0005515(InterPro)
Lac1g2432 1198 Pfam Leucine Rich Repeat 401 421 IPR001611 GO:0005515(InterPro)
Lac1g2432 1198 Pfam Leucine Rich Repeat 665 683 IPR001611 GO:0005515(InterPro)
Lac1g2432 1198 Pfam Leucine Rich Repeat 351 368 IPR001611 GO:0005515(InterPro)
Lac1g2432 1198 Pfam Leucine Rich Repeat 233 250 IPR001611 GO:0005515(InterPro)
Lac1g2432 1198 Pfam Leucine Rich Repeat 257 278 IPR001611 GO:0005515(InterPro)
Lac1g2432 1198 SUPERFAMILY Protein kinase-like (PK-like) 874 1164 IPR011009 -
Lac1g2432 1198 PRINTS Leucine-rich repeat signature 708 721 - -
Lac1g2432 1198 PRINTS Leucine-rich repeat signature 352 365 - -
Lac1g2432 1198 SUPERFAMILY L domain-like 654 776 - -
Lac1g2432 1198 ProSitePatterns Protein kinases ATP-binding region signature. 894 917 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0962 Lac-Chr10:7697711 Lac1g2432 Lac-Chr1:45792759 1.40E-40 dispersed
Lac1g2432 Lac-Chr1:45792759 Lac4g2713 Lac-Chr4:46096893 1.10E-74 dispersed
Lac6g0269 Lac-Chr6:2165367 Lac1g2432 Lac-Chr1:45792759 7.80E-45 dispersed
Lac3g0125 Lac-Chr3:885970 Lac1g2432 Lac-Chr1:45792759 3.80E-53 transposed
Lac4g1855 Lac-Chr4:37861223 Lac1g2432 Lac-Chr1:45792759 6.00E-66 transposed
Lac5g2914 Lac-Chr5:47292775 Lac1g2432 Lac-Chr1:45792759 1.60E-90 transposed
Lac8g2195 Lac-Chr8:40251030 Lac1g2432 Lac-Chr1:45792759 5.40E-143 transposed
Lac8g2645 Lac-Chr8:43970511 Lac1g2432 Lac-Chr1:45792759 6.10E-61 transposed
Lac1g2432 Lac-Chr1:45792759 Lac3g0862 Lac-Chr3:6916549 3.20E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85913 PF00069 Pkinase 2.10E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2432 K13415 - csv:101209118 2142.85