Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g2434 | ATGGGATCATCTCCGGCGTCCGACGAGATAATGGTGAACCAGTTGGTGAGTCTACTGCAAGCCGAGCACGCCGCCGCCGCCGCCGCCGCTATTACCACCAATTTCAATTTATTTTCATTCCCTGAAATTGAAAACAGCACCGCCGTGGACCTCCACCAACAATCATTCCTGAAACCCTTCTTCTGTACGAGTACGGAGCCTCCAGCTCATTATTTGTCCCAACAACAACAATCTCAGCCGCCCCTTCTCTTTTCTCTCAAGCCGCCCTCTCTTCTTCACTTTCCTTCCTCCCTCCCCTCCACCACCGCCACCTCCTCCCATCTCTGGGATAATGTGGGGGAGGGCTTTGTGAGGGGGAGAAATGGGAGCGGAGACAGCGGTGGCGACGAGGACCGTAAGCCGCCGCGGTTGAGGGCGACGGCGACGGCGACGATTAAGATGAAGAGGATAAAGGGGAGGAAGAAAGTGAGAGAGCCAAGATTCTGCTTCAAAACCATGAGCGATGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTACGGCCAAAAAGTTGTTAAGAACACCCTCCACCCCAGGAGTTACTATCGTTGCACACAGGATAATTGTAGGGTAAAGAAGCGAGTAGAAAGATTAGCGGAAGATCCAAGGATGGTGATAACGACCTATGAAGGAAGACACGCTCATTCACCATCACTTGATAATTTAGAAGAGACAATGGGTCAGTTACCGTCGGGTCACTTTAACAATTTCTTCCGGTAG | 762 | 51.05 | MGSSPASDEIMVNQLVSLLQAEHAAAAAAAITTNFNLFSFPEIENSTAVDLHQQSFLKPFFCTSTEPPAHYLSQQQQSQPPLLFSLKPPSLLHFPSSLPSTTATSSHLWDNVGEGFVRGRNGSGDSGGDEDRKPPRLRATATATIKMKRIKGRKKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSLDNLEETMGQLPSGHFNNFFR | 253 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 45817192 | 45818851 | - | Lag0012926.1 | Lac1g2434 | 596005 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g2434 | 253 | Gene3D | WRKY domain | 159 | 225 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac1g2434 | 253 | SUPERFAMILY | WRKY DNA-binding domain | 164 | 230 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac1g2434 | 253 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 136 | 234 | IPR044810 | GO:0003700(InterPro) | |
| Lac1g2434 | 253 | Pfam | WRKY DNA -binding domain | 173 | 229 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac1g2434 | 253 | FunFam | WRKY transcription factor 57 | 158 | 232 | - | - | |
| Lac1g2434 | 253 | ProSiteProfiles | WRKY domain profile. | 167 | 232 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac1g2434 | 253 | SMART | WRKY_cls | 172 | 231 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g2434 | Lac-Chr1:45817192 | Lac7g0034 | Lac-Chr7:284013 | 1.20E-37 | dispersed | |
| Lac1g2434 | Lac-Chr1:45817192 | Lac9g0429 | Lac-Chr9:8038047 | 5.50E-48 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23289 | PF03106 | WRKY | 1.10E-24 | CL0274 | Lac | TF |
Pathway information