Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2434 ATGGGATCATCTCCGGCGTCCGACGAGATAATGGTGAACCAGTTGGTGAGTCTACTGCAAGCCGAGCACGCCGCCGCCGCCGCCGCCGCTATTACCACCAATTTCAATTTATTTTCATTCCCTGAAATTGAAAACAGCACCGCCGTGGACCTCCACCAACAATCATTCCTGAAACCCTTCTTCTGTACGAGTACGGAGCCTCCAGCTCATTATTTGTCCCAACAACAACAATCTCAGCCGCCCCTTCTCTTTTCTCTCAAGCCGCCCTCTCTTCTTCACTTTCCTTCCTCCCTCCCCTCCACCACCGCCACCTCCTCCCATCTCTGGGATAATGTGGGGGAGGGCTTTGTGAGGGGGAGAAATGGGAGCGGAGACAGCGGTGGCGACGAGGACCGTAAGCCGCCGCGGTTGAGGGCGACGGCGACGGCGACGATTAAGATGAAGAGGATAAAGGGGAGGAAGAAAGTGAGAGAGCCAAGATTCTGCTTCAAAACCATGAGCGATGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTACGGCCAAAAAGTTGTTAAGAACACCCTCCACCCCAGGAGTTACTATCGTTGCACACAGGATAATTGTAGGGTAAAGAAGCGAGTAGAAAGATTAGCGGAAGATCCAAGGATGGTGATAACGACCTATGAAGGAAGACACGCTCATTCACCATCACTTGATAATTTAGAAGAGACAATGGGTCAGTTACCGTCGGGTCACTTTAACAATTTCTTCCGGTAG 762 51.05 MGSSPASDEIMVNQLVSLLQAEHAAAAAAAITTNFNLFSFPEIENSTAVDLHQQSFLKPFFCTSTEPPAHYLSQQQQSQPPLLFSLKPPSLLHFPSSLPSTTATSSHLWDNVGEGFVRGRNGSGDSGGDEDRKPPRLRATATATIKMKRIKGRKKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSLDNLEETMGQLPSGHFNNFFR 253
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 45817192 45818851 - Lag0012926.1 Lac1g2434 596005
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2434 253 Gene3D WRKY domain 159 225 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2434 253 SUPERFAMILY WRKY DNA-binding domain 164 230 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2434 253 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 136 234 IPR044810 GO:0003700(InterPro)
Lac1g2434 253 Pfam WRKY DNA -binding domain 173 229 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2434 253 FunFam WRKY transcription factor 57 158 232 - -
Lac1g2434 253 ProSiteProfiles WRKY domain profile. 167 232 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2434 253 SMART WRKY_cls 172 231 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2434 Lac-Chr1:45817192 Lac7g0034 Lac-Chr7:284013 1.20E-37 dispersed
Lac1g2434 Lac-Chr1:45817192 Lac9g0429 Lac-Chr9:8038047 5.50E-48 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23289 PF03106 WRKY 1.10E-24 CL0274 Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2434 - - - 0.0