Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2454 ATGATGGCGGGGCGAGACGCTTTCAGCGCAACTCTCTCATGGTTGTTTTTCATCCTTTCAAAGAATCCAATTGTGGTAGAAAAGATCCGAGAAGAGCTCAACGGCACAACAATCCCACAGAGCGAAGAATCTCAAAAACAACCAAGAATATTCACCATTGAAGAGCTCAACGACCTCGTTTACTTGCATGGAGCCTTGTGCGAAACACTTCGTCTCTATCCTGCAGTCCCGTTTCAGCACAAATCTCCGGCAGAAGCCGACACCCTTCCGAGTGGCCACCGTGTGAAGCCGCACACGGCAGTCATCGTCTCGTTGTACGCGTTGGGAAGAATGAGGTGTGTTTGGGGAGAGGATTGTGAAGAGTTCAAACCAGAGAGATGGATTTCGGATGAAGGGACGATGAAAAGAGAGCCTTCGTATAAGTTCTTCAGTTTCAATGCAGGGCCGAGGAGTTGTTTGGGAAAAGGAGTGGCTTTTTCCCAGTTGAAGATTGTTTCAGCTGCCATTGTTTATAACTACGACATTCAAGCTGTTGAAGACAACAACAATGTTGTTGTTGCTCCTGTTCCTTCTGTGATACTTCACATGAACAGTGGGTTCCATGTTAGGGTTTCTAAGAGATGGTCCTGA 630 46.98 MMAGRDAFSATLSWLFFILSKNPIVVEKIREELNGTTIPQSEESQKQPRIFTIEELNDLVYLHGALCETLRLYPAVPFQHKSPAEADTLPSGHRVKPHTAVIVSLYALGRMRCVWGEDCEEFKPERWISDEGTMKREPSYKFFSFNAGPRSCLGKGVAFSQLKIVSAAIVYNYDIQAVEDNNNVVVAPVPSVILHMNSGFHVRVSKRWS 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 46001011 46001640 + Lag0012946.1 Lac1g2454 596025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2454 209 PRINTS P450 superfamily signature 64 75 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2454 209 PRINTS P450 superfamily signature 152 163 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2454 209 PRINTS P450 superfamily signature 3 20 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2454 209 PRINTS P450 superfamily signature 143 152 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2454 209 Pfam Cytochrome P450 1 182 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2454 209 PRINTS E-class P450 group I signature 12 38 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2454 209 PRINTS E-class P450 group I signature 152 175 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2454 209 PRINTS E-class P450 group I signature 63 81 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2454 209 PRINTS E-class P450 group I signature 142 152 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2454 209 PANTHER CYTOCHROME P450 1 200 - -
Lac1g2454 209 Gene3D Cytochrome P450 1 209 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2454 209 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 145 154 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac1g2454 209 SUPERFAMILY Cytochrome P450 1 207 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2454 Lac-Chr1:46001011 Lac1g2458 Lac-Chr1:46020997 5.80E-112 dispersed
Lac1g2453 Lac-Chr1:45991030 Lac1g2454 Lac-Chr1:46001011 1.00E-93 tandem
Lac1g2454 Lac-Chr1:46001011 Lac1g2455 Lac-Chr1:46005180 1.50E-88 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2454 - - - 0.0