Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2458 ATGTCCGGCGACTGGCGGCCACCGCTCGCAGCCGCCGTCGGCCGCCGGAGGCTGACGGCAGCGGCGAGGATGGCCGACGATGGTGGAGACAGGTATATAGTTAACGAATATAACGAGCTCGAATGCACCGACAAGTTCTTGAGAGACACCGTCTTAAACTTCATGATGGCGGGGCGAGACGCTTTCAGCGCAACTCTCTCATGGTTGTTCTTCATCCTCTCAAAGAATCCAATTGTGGTAGAAAAGATCCGAGAAGAGCTCAACGGCACAACAATCCCACAGAGCGAAGAATCTAAAAAACAACCACGAATTTTCACCATTGAAGAGCTCAACGACCTCGTTTACTTGCATGGAGCCTTATGCGAAACGCTTCGTCTCTATCCTCCGATTGCGTTCGAGCACAAATCTCCGGCAGAGGCCGACACCCTTCCGAGCGGCCACCACGTGAAGCCACACACGATGATCCTCTTCTCGTTGTACGCACTGGGAAGAATGAGGTCTGTTTGGGGAGAGGATTGCGAAGAATTCAAACCAGAGAGATGGGTTTCGGAGAAGGGGACGATCAAACGAGAGCCTTCCTATAAGTTCTTCAGTTTCAATGCAGGGCCGAGGAGTTGTTTGGGAAAAGGAGTGGCTTTTTCCCAGTTGAAGATTGTTTCAGCTGCCATTATCCATAACTACGACATTCAAGCTGTTGAAGACAACAACAATGTTGTTGTTGCTCCTGTTCCTTCTGTGATACTTCACATGAACAGTGGGTTCCATGTTAGGGTTTCTAAGAGATGGTCCTGA 792 50.25 MSGDWRPPLAAAVGRRRLTAAARMADDGGDRYIVNEYNELECTDKFLRDTVLNFMMAGRDAFSATLSWLFFILSKNPIVVEKIREELNGTTIPQSEESKKQPRIFTIEELNDLVYLHGALCETLRLYPPIAFEHKSPAEADTLPSGHHVKPHTMILFSLYALGRMRSVWGEDCEEFKPERWVSEKGTIKREPSYKFFSFNAGPRSCLGKGVAFSQLKIVSAAIIHNYDIQAVEDNNNVVVAPVPSVILHMNSGFHVRVSKRWS 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 46020997 46023136 + Lag0012950.1 Lac1g2458 596029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2458 263 PRINTS E-class P450 group I signature 66 92 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2458 263 PRINTS E-class P450 group I signature 196 206 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2458 263 PRINTS E-class P450 group I signature 206 229 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2458 263 PRINTS E-class P450 group I signature 46 63 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2458 263 PANTHER CYTOCHROME P450 31 254 - -
Lac1g2458 263 Pfam Cytochrome P450 36 236 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2458 263 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 199 208 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac1g2458 263 SUPERFAMILY Cytochrome P450 26 261 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2458 263 PRINTS P450 superfamily signature 197 206 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2458 263 PRINTS P450 superfamily signature 206 217 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2458 263 PRINTS P450 superfamily signature 57 74 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2458 263 PRINTS P450 superfamily signature 118 129 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac1g2458 263 Gene3D Cytochrome P450 5 262 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2454 Lac-Chr1:46001011 Lac1g2458 Lac-Chr1:46020997 5.80E-112 dispersed
Lac1g2458 Lac-Chr1:46020997 Lac1g2461 Lac-Chr1:46080536 6.30E-79 dispersed
Lac1g2458 Lac-Chr1:46020997 Lac1g2459 Lac-Chr1:46028661 1.10E-80 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2458 - - - 0.0