Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2477 ATGGCGAATGAGTTTGGAGAATCAACAAGTGTGCCACATCAAAATCCCTCTTGGTCCAGTAATAGTGACAGCACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTCGAGTTAGCTCAAGATCCAATTATCACTCTTTGTGGCCACCTCTTTTGCTGGCCCTGTTTGTATAGATGGCTGCATCATCACTCGCAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTGTTCAGGAGGAGAAGTTGGTTCCTCTTTATGGTAGGGGCAAGGTACCGTCTGACCCGAGATTAAATAGTTATCCTGGTATCGATGTTCCGAGTCGCCCTGCCGGGCAAAGGCCTCAAACAGCACCTCCCCCTGTTGCTAATGACTTTGCAAACTATGGTTTTGGATTCACTGGTGGATTTATGCCGATGGCAACAGCAAGGATTGGAAACTTCACTTTGGCTACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACGGTTTATGGAACTACTTCTGGTTACCCTTATGCATTCAACACATTCCATGGGGGTCATGGCCACCATTTTCCACAACCACCGAGCCGAGGTCAGCATGCTGATAATATACTGAAAAACCTCCTTATACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTTTGGTGGTGA 687 44.98 MANEFGESTSVPHQNPSWSSNSDSTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALVQEEKLVPLYGRGKVPSDPRLNSYPGIDVPSRPAGQRPQTAPPPVANDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPYAFNTFHGGHGHHFPQPPSRGQHADNILKNLLILVGVFVILALLWW 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 46218958 46219644 + Lag0012969.1 Lac1g2477 596048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2477 228 MobiDBLite consensus disorder prediction 94 118 - -
Lac1g2477 228 Pfam Ring finger domain 33 75 IPR001841 -
Lac1g2477 228 SUPERFAMILY RING/U-box 30 87 - -
Lac1g2477 228 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Lac1g2477 228 CDD RING-HC_AtRMA-like 32 76 - -
Lac1g2477 228 SMART ring_2 34 74 IPR001841 -
Lac1g2477 228 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Lac1g2477 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 220 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Lac1g2477 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
Lac1g2477 228 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 88 - -
Lac1g2477 228 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2477 Lac-Chr1:46218958 Lac9g2160 Lac-Chr9:41077296 1.90E-23 dispersed
Lac1g2477 Lac-Chr1:46218958 Lac6g0376 Lac-Chr6:3109359 1.80E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2477 K10666 - csv:101205026 448.358