Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2488 ATGCTCCTCCCCAACCCACCGTCGACCTCGCTCCACGGCTTTGAAGGCAGTGGGGTTGGAGATCAGGCCGCTTTCGGCCAATTCACCGTCGTCGAAAGTCAAGGGCTTTCGCTCTCGCTTCACTCGTCCTCCTTACAACACTTGGAGGACGCTGCCACCGCCGTGAAAGGCGATGACTTGCGAATTAGGGATGGTGGGATTCTGTATAATTACAACAACAACCAAGTCCACGGCGGCGGAGGAAGTGGATCGGCGGCGTCGTCAATTTTGCAATATTCTTTTAGGAATAATTCAGAGAATTCTCCTCATGGCTTTCAAGCTTCACAAATTAATCCAAACCATCAAGTTCAAATTGGATTTGGGTCGTCTTTGGGAGTTGTAAATGTGTTGAGGAATTCTAAATATGCCAAAGCCGCTCAAGAATTGCTCGAGGAATTTTGCAGCGTTGGGAGGGTTCAATTGAAGAAGAACAAGTTCAATATCAAGCCAAACCCCAATCCTGAAACAGCCGCAGGCGGCGGTGGAGGCGGCGGCTCTTCATCGTCATCAAAGGATCAACCACCCATATCGGCAGCTGATAGAATTGAGCATCAGCGGAGGAAGGTTGAACGCAGATACAACCTGTACCGCGAGCAAATGCAAATGGTAGTGAACTCATTCGACCTGGTGATGGGGTTCGGGGCAGCAGCGCCGTACACGACGCTGACGCAGAAGGCGATGTCGAGGCACTTTCGATGCCTAAAAGACGCCATAGCGGAGCAATTGAAGCAGAGCTACGAGGCATTGGGAGAGAAAGGAGGAGCCGGAGGCTCAGGAATAACAAAAGGAGAGACACCAAGGCTGAAGCTCCTCGAGCAGAGCCTCCGCCAGCAAAGGGCATTCCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGACCACAGCGTGGCCTCCCCGAACGATCTGTCAACATTCTGAGAGCTTGGCTCTTCGAGCATTTCCTTCACCCGTACCCCAGCGACGCAGACAAGCTTCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTCTCGAATTGGTTCATTAATGCAAGAGTTCGGTTGTGGAAACCAATGGTGGAAGAAATGTACCAGCTTGAAGGCAAGGTCGAATCAGATCATCATCATCATCAAACATCAGAAGACGACACCACCACAGACAATAAGGCCCAAAAAAGTCTCATTATAAATGCACAGAATAACAATCCAACACCCACCGCCACTTCTTCCTCCGTTCCACCGCCGTCAGCCACCGCGGCCGAGGGGTTCACGGCGGCGCATGACTACTCGGAGCTGCATGATGTGTGGCGACATGGAAGTGGAGAACATTATGGGACCATGTCTGAGGATGTTTCAGCGGCGGCTGACATGAATAATGGCCCAACACTTATAAGGTTCGGGACCACTGCTGCGCCCACTGGTGACGTGTCACTCACTTTAGGGCTCCGCCACGCCGGAAACACCTCCGCCGCCGATAACCCTTCTTTCTCGCTCAGAGACTTTGGTCACTCTTAG 1536 51.76 MLLPNPPSTSLHGFEGSGVGDQAAFGQFTVVESQGLSLSLHSSSLQHLEDAATAVKGDDLRIRDGGILYNYNNNQVHGGGGSGSAASSILQYSFRNNSENSPHGFQASQINPNHQVQIGFGSSLGVVNVLRNSKYAKAAQELLEEFCSVGRVQLKKNKFNIKPNPNPETAAGGGGGGGSSSSSKDQPPISAADRIEHQRRKVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAEQLKQSYEALGEKGGAGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEGKVESDHHHHQTSEDDTTTDNKAQKSLIINAQNNNPTPTATSSSVPPPSATAAEGFTAAHDYSELHDVWRHGSGEHYGTMSEDVSAAADMNNGPTLIRFGTTAAPTGDVSLTLGLRHAGNTSAADNPSFSLRDFGHS 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 46314448 46318343 + Lag0012980.1 Lac1g2488 596059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2488 511 ProSiteProfiles 'Homeobox' domain profile. 302 365 IPR001356 GO:0003677(InterPro)
Lac1g2488 511 Gene3D - 308 370 - -
Lac1g2488 511 MobiDBLite consensus disorder prediction 405 426 - -
Lac1g2488 511 SMART prehox3 124 253 IPR006563 -
Lac1g2488 511 MobiDBLite consensus disorder prediction 405 424 - -
Lac1g2488 511 CDD homeodomain 305 366 IPR001356 GO:0003677(InterPro)
Lac1g2488 511 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 91 403 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac1g2488 511 MobiDBLite consensus disorder prediction 376 395 - -
Lac1g2488 511 Pfam Associated with HOX 129 252 IPR006563 -
Lac1g2488 511 MobiDBLite consensus disorder prediction 158 197 - -
Lac1g2488 511 Pfam Homeobox KN domain 322 361 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac1g2488 511 SMART HOX_1 305 369 IPR001356 GO:0003677(InterPro)
Lac1g2488 511 FunFam BEL1-like homeodomain protein 4 308 370 - -
Lac1g2488 511 SUPERFAMILY Homeodomain-like 306 373 IPR009057 -
Lac1g2488 511 Coils Coil 192 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2061 Lac-Chr11:36432936 Lac1g2488 Lac-Chr1:46314448 7.00E-70 dispersed
Lac1g2488 Lac-Chr1:46314448 Lac9g1723 Lac-Chr9:36821664 1.00E-64 dispersed
Lac1g2488 Lac-Chr1:46314448 Lac9g0810 Lac-Chr9:17043637 6.80E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23293 PF07526 POX 3.40E-38 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2488 - - - 0.0