Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2500 ATGATCGTGTCGACCTCGTCTCTAACCAGCGTCCAGGCAGGGGATGATTCTGTTTGTTTCTTATTCAGTTGGAGTAAGTTGCAGTCAACTATGACTTTGCACCGAAGCTTTTTGATCGTTATAATCGCAATTTTCTCGGCCTCTTTAACAATCGCCGAGAAGTTAACGTCCTGCGAAACCGGGAATTCGGCTGAATTTGTACGCCATCCGTTTGGATTCTCAAGCTCGAGCCCAATCAAATTGAATTGCAGCAAAAATGGCGAGACTCAAATCGGCACATTCCAGGTCCGGAACATTACTGAAAGGAGCATCCTCATCAAACTTCCTGCAGAGTGCAGCATCTCTATCAATTCAATTTCAGAACTGTACGGAAAAAACTACATGCCCACTCGCCGCAACAGTCTCATCTTGAATTGTACTGAACAACCTATTCCATGCCAAATACCTGCCAATTTGAGCCAGCATCTGCCGAAATGCAGTTTTAAGAGCAATAATCTCAGCTGCTTCACCAAAACCGAGCAAAATGGATTTCTGCCCTCTTTAAATAAGTGCCAGTCCCTTTTTTACTCTTTATTCGTTAATTCTACATCAAAATCGGCCTCTTTGTTAGAGTTCGAGGTGGAGCTCGGTGTCATTGAGTTAGAGTGGTGGCTTCCACCCTTGGCTTCCGTACGATGCTCAACAAATGCCAAACGCACGAACATTACTAGCTCGGGCCTCCTAGGATTTCGTTGCCAGTGCATAGAAGGGTTTGAAGGAAATGCTTACGACGACGCCGACAACGGCTGCCGGAAAGTTTCTCACCATTGCAATCCTTCAACATACATTACTGGCCGATGTGGCGGAGGCAAAGTCGTCCCTGCTCTAATTGCAGGTGTTTTTGTTGGAGCTTTTCTAATGGCTGTCCTGACCCTTCTCTGTTACTGCATCCGACGCCGCTCAATGTGTCTGAAAGGTCAGATGAGTGCAAAGCGGCTTCTAAGTGAGGCCGCTGGAAATTCCAGTGTTACTTTATATCCCTACAAAGAAATAGAAAGAGCCACTAATGGCTTCTCCGAGAAACAAAGGCTGGGAACTGGAGCCTTTGGTACAGTCTATGCAGGAAGGATTCATGAGGATGAGTGGGTTGCTGTAAAAAGGATCAAATATAGAGACCACAATAGCATTGACCAGGTCATGAATGAGATAAAACTACTCTCCTCGGTGAGCCACCCGAATCTAGTCCGCTTGCTTGGCTGCTGTATTGAAGAAGGCCAACAGATCCTTGTCTATGAGTTTATGCCCAATGGAACTCTCTCTCAACATCTTCAGAGAGAGCGTGGAAATGGCCTTCCATGGACGACAAGACTCACCATTGCAGCCGAAACTTCTCGTGCAATAGCATACCTCCATTCTTCTGTGCATCCACCAATATATCACAGAGACATCAAGTCAAGCAATATACTTCTGGATCATGGCTTCAAATCAAAAGTTGCAGATTTTGGTCTTTCTAGACTTGGTATGACTGAAATATCACACGTCTCAACAGCTCCACAAGGGACCCCGGGATATGTTGATCCACAATACCATCAAAATTTCTATCTTTCAGATAAAAGTGACGTTTATAGTTTTGGAGTAGTCCTAGTAGAGATAATAACAGCATTGAAAGTGGTTGATTTCACTCGTCCCCAAAGTGAAGTAAACTTAGCTGCACTTGCCATCGATAGGATTGGGAGAGGTGCTGTGGACGAACTAATTGATCCTTTCCTCGAGCCACATAGAGATGCTTGGACCCTCTACTCTATTCACAAGGTGGCTGAGCTTGCATTCAGATGCCTTGCTTTTCATAGCGACATGAGGCCTTCAATGACAGAAGTAGCAGAGGAACTGGAATGCATCAGACGCAGTGGGTGGACATCAATGGAGGAGCATTTTTGTGCAGCATCATCAGCAGGATCGGCTTGCTCATCCCCTCGTAGCGTGAGCGAGAGATCCATAAGTGGCATCACGATGAAGAAAGCCGCGCTGCTTGCAGGACTGGGGAGCCAGAGGTTGGTAATCCCACCGGAGAACAATCATCATAAGGACTATCTGCCTCCTGTAGAGGAAGTTATGGATAGTTCCCCAGTTTCCATACAGGATCCTTGGTTAAGTGAACAAAGCTCACCTTCAACAAATAGTTTATTGGGTAACGTAGCACGGTGA 2184 45.83 MIVSTSSLTSVQAGDDSVCFLFSWSKLQSTMTLHRSFLIVIIAIFSASLTIAEKLTSCETGNSAEFVRHPFGFSSSSPIKLNCSKNGETQIGTFQVRNITERSILIKLPAECSISINSISELYGKNYMPTRRNSLILNCTEQPIPCQIPANLSQHLPKCSFKSNNLSCFTKTEQNGFLPSLNKCQSLFYSLFVNSTSKSASLLEFEVELGVIELEWWLPPLASVRCSTNAKRTNITSSGLLGFRCQCIEGFEGNAYDDADNGCRKVSHHCNPSTYITGRCGGGKVVPALIAGVFVGAFLMAVLTLLCYCIRRRSMCLKGQMSAKRLLSEAAGNSSVTLYPYKEIERATNGFSEKQRLGTGAFGTVYAGRIHEDEWVAVKRIKYRDHNSIDQVMNEIKLLSSVSHPNLVRLLGCCIEEGQQILVYEFMPNGTLSQHLQRERGNGLPWTTRLTIAAETSRAIAYLHSSVHPPIYHRDIKSSNILLDHGFKSKVADFGLSRLGMTEISHVSTAPQGTPGYVDPQYHQNFYLSDKSDVYSFGVVLVEIITALKVVDFTRPQSEVNLAALAIDRIGRGAVDELIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPSMTEVAEELECIRRSGWTSMEEHFCAASSAGSACSSPRSVSERSISGITMKKAALLAGLGSQRLVIPPENNHHKDYLPPVEEVMDSSPVSIQDPWLSEQSSPSTNSLLGNVAR 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 46415532 46419401 - Lag0012992.1 Lac1g2500 596071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2500 727 FunFam Wall-associated receptor kinase-like 14 318 426 - -
Lac1g2500 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2500 727 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 62 713 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lac1g2500 727 SMART serkin_6 351 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2500 727 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524(InterPro)
Lac1g2500 727 Gene3D Transferase(Phosphotransferase) domain 1 427 642 - -
Lac1g2500 727 Gene3D Phosphorylase Kinase; domain 1 312 426 - -
Lac1g2500 727 FunFam Wall-associated receptor kinase-like 20 427 636 - -
Lac1g2500 727 MobiDBLite consensus disorder prediction 704 727 - -
Lac1g2500 727 SUPERFAMILY Protein kinase-like (PK-like) 331 624 IPR011009 -
Lac1g2500 727 ProSiteProfiles Protein kinase domain profile. 351 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2500 727 MobiDBLite consensus disorder prediction 702 727 - -
Lac1g2500 727 Pfam Protein kinase domain 352 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2500 Lac-Chr1:46415532 Lac4g0157 Lac-Chr4:2834852 9.20E-80 dispersed
Lac1g1516 Lac-Chr1:36257357 Lac1g2500 Lac-Chr1:46415532 6.20E-165 transposed
Lac1g2500 Lac-Chr1:46415532 Lac6g0368 Lac-Chr6:3054720 4.60E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85917 PF07714 PK_Tyr_Ser-Thr 2.50E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2500 - - - 0.0