Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2524 ATGCCTTCCGACGCCGGCGACCACCGCAAGACCGCCACCAAGCCCATCGCCTCCGGCGGGGCCTGCCCTCCGCCGGAGCAAGAGCACCTTCCTTGCCCACGATGTGATTCTACTAATACCAAGTTCTGTTACTACAATAACTATAATTTCTCTCAGCCCAGGCACTTTTGTAAGTCCTGTCGCCGTTACTGGACCCACGGTGGGACCCTCCGGGACATTCCCGTTGGCGGTGGAAGCAGGAAGAATGCCAAGCGCTCTCGTACTTGCATTCCCGCGGCGGCGGCTGCGGTTGTTTCTTCTTCGTCTGGCTCGTTGACTAATTCTGTTTCTCGGTTGGATCATCATCCGTTGCCGGCGACTCCGGTGCTGGTGCCGCTCGTCGGTGGCCATGGTGGGGGGTTCAGTTCGGCGGCGGCGGGGGGAGTTGAAGGCCGTTTGGGCGGGTTCGGCCTCGGGCTCGGGTCGGGGTTCGAGGATGTGGGCTATGGGGCGGCTAGTTCTAGGGTGGCTTGGCCGTTTCTCGGGCTGGGTGACGGCGGCGCTGGGGTAGGCGGCCACGGCGGGGCGGCGAACACGTGGCAGTTTGAGAATGGAGACGCCGCCGGTTTTGTGGGGGCTGCTGATTGTTTGTCTTGGCCGGAATTGGCAATTTCCACTCCGGGGAATGGGCTCAAATGA 678 61.95 MPSDAGDHRKTATKPIASGGACPPPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTCIPAAAAAVVSSSSGSLTNSVSRLDHHPLPATPVLVPLVGGHGGGFSSAAAGGVEGRLGGFGLGLGSGFEDVGYGAASSRVAWPFLGLGDGGAGVGGHGGAANTWQFENGDAAGFVGAADCLSWPELAISTPGNGLK 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 46638121 46638859 + Lag0013016.1 Lac1g2524 596095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2524 225 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac1g2524 225 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 95 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2524 225 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac1g2524 225 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac1g2524 225 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2524 Lac-Chr1:46638121 Lac5g3106 Lac-Chr5:48702419 5.40E-63 dispersed
Lac1g2524 Lac-Chr1:46638121 Lac1g2532 Lac-Chr1:46723611 2.60E-25 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23302 PF02701 zf-Dof 2.90E-33 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2524 - - - 0.0