Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2524 ATGCCTTCCGACGCCGGCGACCACCGCAAGACCGCCACCAAGCCCATCGCCTCCGGCGGGGCCTGCCCTCCGCCGGAGCAAGAGCACCTTCCTTGCCCACGATGTGATTCTACTAATACCAAGTTCTGTTACTACAATAACTATAATTTCTCTCAGCCCAGGCACTTTTGTAAGTCCTGTCGCCGTTACTGGACCCACGGTGGGACCCTCCGGGACATTCCCGTTGGCGGTGGAAGCAGGAAGAATGCCAAGCGCTCTCGTACTTGCATTCCCGCGGCGGCGGCTGCGGTTGTTTCTTCTTCGTCTGGCTCGTTGACTAATTCTGTTTCTCGGTTGGATCATCATCCGTTGCCGGCGACTCCGGTGCTGGTGCCGCTCGTCGGTGGCCATGGTGGGGGGTTCAGTTCGGCGGCGGCGGGGGGAGTTGAAGGCCGTTTGGGCGGGTTCGGCCTCGGGCTCGGGTCGGGGTTCGAGGATGTGGGCTATGGGGCGGCTAGTTCTAGGGTGGCTTGGCCGTTTCTCGGGCTGGGTGACGGCGGCGCTGGGGTAGGCGGCCACGGCGGGGCGGCGAACACGTGGCAGTTTGAGAATGGAGACGCCGCCGGTTTTGTGGGGGCTGCTGATTGTTTGTCTTGGCCGGAATTGGCAATTTCCACTCCGGGGAATGGGCTCAAATGA 678 61.95 MPSDAGDHRKTATKPIASGGACPPPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTCIPAAAAAVVSSSSGSLTNSVSRLDHHPLPATPVLVPLVGGHGGGFSSAAAGGVEGRLGGFGLGLGSGFEDVGYGAASSRVAWPFLGLGDGGAGVGGHGGAANTWQFENGDAAGFVGAADCLSWPELAISTPGNGLK 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 46638121 46638859 + Lag0013016.1 Lac1g2524 596095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2524 225 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac1g2524 225 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 95 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2524 225 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac1g2524 225 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac1g2524 225 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2524 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2524 Lac-Chr1:46638121 Lac5g3106 Lac-Chr5:48702419 5.40E-63 dispersed
Lac1g2524 Lac-Chr1:46638121 Lac1g2532 Lac-Chr1:46723611 2.60E-25 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT1G29160 52.5 1.6e-41 166.8
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.1e-39 160.6
Lac8g2507 . 1 136 C2C2-Dof Transcription Factor Family AT2G37590 66.7 6.8e-38 155.6
Lac7g2704 . 67 141 C2C2-Dof Transcription Factor Family AT2G37590 90.7 4.4e-37 152.9
Lac3g0612 . 115 466 C2C2-Dof Transcription Factor Family AT3G47500 53.1 2.2e-87 320.5
Lac8g0724 . 149 514 C2C2-Dof Transcription Factor Family AT3G47500 50.3 5.0e-76 282.7
Lac1g2524 . 1 149 C2C2-Dof Transcription Factor Family AT5G66940 56.3 2.7e-38 156.4
Lac7g2704 . 66 141 C2C2-Dof Transcription Factor Family AT5G02460 90.8 2.8e-38 157.1
Lac1g2032 . 53 126 C2C2-Dof Transcription Factor Family AT5G02460 87.8 9.0e-37 152.1
Lac10g3099 . 52 134 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.9e-37 153.7
Lac3g0537 . 29 325 C2C2-Dof Transcription Factor Family AT5G60850 52.9 2.4e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006049 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 2 2 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23302 PF02701 zf-Dof 2.90E-33 No_clan Lac TF