Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2543 ATGCGTTGGTTGCGTAACATCTCCTTTACCCCTTCCTCCATGGTGAGGTTTCCGGGCACTGCCACCGCTGGTGATTCTCCCTCCAGAACCTCCGCCACTACTGCCTCTGACAATCATAGTTATCGGAGAATTGCTTGGCGTTTTGGCGCCTCTAAGTATTCGCGCCATAGGAAGCTACGGAACCTAAGCGGACGTGAACGCAACGCTGCTTCTTTGGCTAAATGGTCTGATTCTTCCGCCGAGCCCGTCTCCTTGTCGCGATCGCCGAGTGCCTCTGATGACCTTGCCGTGCCCTTGCCGCTCCCGGAGGTTTCTCCCGTTTTTCAGCGTCGTGAAGGGGTTTCGAATTCCAATTCTTTCACTGGAGACGGGGATTGCCCTCTTCCGTCGCCTAAGCTTTGGCGTGGTAGAAGCGGGGATGAGCGCGATGTAGATAGAGATAGAACTGCTCCTGCTCCAAAAGTTGGGGGCGGGGCCTCCACTAGCGCTCCGGTTAAAAGTCTATTTGATTCCCGGGAGAACCAAAAGAAAGAAGATCAGGTTGAGACAAGGTCGTCTCAGAGGGTGAATCAAGATGCAACAGGATATCCTGAAAGATCTCGGAACCGTTTTTGGATTGATGTTCCCAGTAGGAGTGCTCCTACTAGTCCTTATGCAAGTCCAACGCTCAGTCCCCAAAGAAATAGTTCCGGTAACCTTTCAAATTTCCATCATGTGGCTCCAGTGGGAAATCAAGACTGGTCTGCACCTGAGCTGCCAAATTTTCATTATGCAACTCCAGTAGGAAATTACGTCTGGTCTGCACCTGAGCTGCCAGCCTCACCAATGATGCGGGGGGTTCCTCCTGCATTCTTTGATGGCTCCACTCTTAGCTGTGAGAGTTCTCCCATGCATAGCCCAAGAGGTAGAAGTCCCCACCGAGATCCCAGAAGTCCAACAGGAGCTGCATCTCCATTGCACACCAAGATTTCCCTTGAAACACATGGTGCACGTCGTGAAGGTGCTTGTCCTATCAATGTCCACCCTTTACCTCTTCCTCCTGGAGTACCAATGCTGTCATCATCAACCCCAATGGCTTCACCATCAACTCCAATGGCTTCACCATCAATCCCAATGCCTTCACCATCAACCACAATGCCATCAACCACAATGCCTTCACCATCAATCCCAATGCCTTCACCATCAATCCCAATGCCTTCACCATCAACCCCAATGCCTTCACCAACCCCCCCAATTCCACAAGCTAACACTAGAACTGAGTCAATCTCAATGAAAAATCAATGGCAGAAAGGAAAGCTTATTGGCCGGGGCACATTTGGAAGTGTTTATGTTGCAAGCAACAGAGAAAATGGATCTTTATGTGCAATGAAGGAAGTTGAATTATTTCCTGACGATCCAAAATCTGCTGAATGTATAAAGCAATTAGAACAGGAGATAAAGCTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGCAGTGACATTGTTGAAGATAGATTATATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGGAATTTTACTCGTCACATCCTCTCAGGGTTGGCCTACTTGCACAGCACAAAAACTATACACCGGGACATTAAAGGTGCTAATTTGCTTGTGGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTTTAAAGGGAAGTCCTTACTGGATGGCTCCTGAGCTCCTTCTATCTGTGATGCAGAAAGATAACAACTCTGATCTTGCTCTGGCTGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAGCCACCTTGGAGCGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATGCGAGATACCCCGACAATACCTGAATCATTGTCATATGAAGCCAGAGATTTCTTAAAATGTTGCTTTCAGAGAAATCCTGCAGAGAGGCCGACTGCTGCCATGCTGCTTGAACATCCGTTTATGAAAAACTTGCAGCATCCAGATGCTCCATCTTGCTTGCAGGCCGTTGCTGGAGCAAATTTGATGGATAAATGCTATAGTCCAAGTGAACACTATTCAAGTAAATTTGATCAGTCTTCCTTGCTTCCAAGCTCACAAAATTTCAAGGGAAAGTTAGCAGCTGAGAGTGTGATTGGCCCACTATCTCATCATGAAACCTCTGACTTAACAGTAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAGGCTCTTCCAGTATTATCTCCTCCACGCTCAGTTCACAATGTGCATAATCTCGGTTCCCCTGCAAACGCGCTTGGCGCTGGAAATCAAACCAATAAGAAGAACCATACACTAATATAG 2427 47.1 MRWLRNISFTPSSMVRFPGTATAGDSPSRTSATTASDNHSYRRIAWRFGASKYSRHRKLRNLSGRERNAASLAKWSDSSAEPVSLSRSPSASDDLAVPLPLPEVSPVFQRREGVSNSNSFTGDGDCPLPSPKLWRGRSGDERDVDRDRTAPAPKVGGGASTSAPVKSLFDSRENQKKEDQVETRSSQRVNQDATGYPERSRNRFWIDVPSRSAPTSPYASPTLSPQRNSSGNLSNFHHVAPVGNQDWSAPELPNFHYATPVGNYVWSAPELPASPMMRGVPPAFFDGSTLSCESSPMHSPRGRSPHRDPRSPTGAASPLHTKISLETHGARREGACPINVHPLPLPPGVPMLSSSTPMASPSTPMASPSIPMPSPSTTMPSTTMPSPSIPMPSPSIPMPSPSTPMPSPTPPIPQANTRTESISMKNQWQKGKLIGRGTFGSVYVASNRENGSLCAMKEVELFPDDPKSAECIKQLEQEIKLLSQLKHPNIVQYYGSDIVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNNSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDTPTIPESLSYEARDFLKCCFQRNPAERPTAAMLLEHPFMKNLQHPDAPSCLQAVAGANLMDKCYSPSEHYSSKFDQSSLLPSSQNFKGKLAAESVIGPLSHHETSDLTVMSRYSPRSTLEALPVLSPPRSVHNVHNLGSPANALGAGNQTNKKNHTLI 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 46808189 46813570 + Lag0013035.1 Lac1g2543 596114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2543 808 ProSitePatterns Protein kinases ATP-binding region signature. 434 457 IPR017441 GO:0005524(InterPro)
Lac1g2543 808 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 74 695 IPR050538 -
Lac1g2543 808 Pfam Protein kinase domain 429 689 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2543 808 MobiDBLite consensus disorder prediction 288 320 - -
Lac1g2543 808 ProSiteProfiles Protein kinase domain profile. 428 689 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2543 808 SMART serkin_6 428 689 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2543 808 FunFam Mitogen-activated protein kinase kinase kinase 5 425 726 - -
Lac1g2543 808 MobiDBLite consensus disorder prediction 72 91 - -
Lac1g2543 808 MobiDBLite consensus disorder prediction 354 388 - -
Lac1g2543 808 MobiDBLite consensus disorder prediction 170 185 - -
Lac1g2543 808 MobiDBLite consensus disorder prediction 113 233 - -
Lac1g2543 808 MobiDBLite consensus disorder prediction 135 150 - -
Lac1g2543 808 MobiDBLite consensus disorder prediction 71 98 - -
Lac1g2543 808 MobiDBLite consensus disorder prediction 16 36 - -
Lac1g2543 808 MobiDBLite consensus disorder prediction 364 388 - -
Lac1g2543 808 MobiDBLite consensus disorder prediction 789 808 - -
Lac1g2543 808 Gene3D Transferase(Phosphotransferase) domain 1 424 722 - -
Lac1g2543 808 SUPERFAMILY Protein kinase-like (PK-like) 400 724 IPR011009 -
Lac1g2543 808 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2543 Lac-Chr1:46808189 Lac6g0356 Lac-Chr6:2949106 2.20E-138 dispersed
Lac1g2543 Lac-Chr1:46808189 Lac11g0043 Lac-Chr11:370305 1.30E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85918 PF00069 Pkinase 7.00E-68 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2543 - - - 0.0