Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2543 | ATGCGTTGGTTGCGTAACATCTCCTTTACCCCTTCCTCCATGGTGAGGTTTCCGGGCACTGCCACCGCTGGTGATTCTCCCTCCAGAACCTCCGCCACTACTGCCTCTGACAATCATAGTTATCGGAGAATTGCTTGGCGTTTTGGCGCCTCTAAGTATTCGCGCCATAGGAAGCTACGGAACCTAAGCGGACGTGAACGCAACGCTGCTTCTTTGGCTAAATGGTCTGATTCTTCCGCCGAGCCCGTCTCCTTGTCGCGATCGCCGAGTGCCTCTGATGACCTTGCCGTGCCCTTGCCGCTCCCGGAGGTTTCTCCCGTTTTTCAGCGTCGTGAAGGGGTTTCGAATTCCAATTCTTTCACTGGAGACGGGGATTGCCCTCTTCCGTCGCCTAAGCTTTGGCGTGGTAGAAGCGGGGATGAGCGCGATGTAGATAGAGATAGAACTGCTCCTGCTCCAAAAGTTGGGGGCGGGGCCTCCACTAGCGCTCCGGTTAAAAGTCTATTTGATTCCCGGGAGAACCAAAAGAAAGAAGATCAGGTTGAGACAAGGTCGTCTCAGAGGGTGAATCAAGATGCAACAGGATATCCTGAAAGATCTCGGAACCGTTTTTGGATTGATGTTCCCAGTAGGAGTGCTCCTACTAGTCCTTATGCAAGTCCAACGCTCAGTCCCCAAAGAAATAGTTCCGGTAACCTTTCAAATTTCCATCATGTGGCTCCAGTGGGAAATCAAGACTGGTCTGCACCTGAGCTGCCAAATTTTCATTATGCAACTCCAGTAGGAAATTACGTCTGGTCTGCACCTGAGCTGCCAGCCTCACCAATGATGCGGGGGGTTCCTCCTGCATTCTTTGATGGCTCCACTCTTAGCTGTGAGAGTTCTCCCATGCATAGCCCAAGAGGTAGAAGTCCCCACCGAGATCCCAGAAGTCCAACAGGAGCTGCATCTCCATTGCACACCAAGATTTCCCTTGAAACACATGGTGCACGTCGTGAAGGTGCTTGTCCTATCAATGTCCACCCTTTACCTCTTCCTCCTGGAGTACCAATGCTGTCATCATCAACCCCAATGGCTTCACCATCAACTCCAATGGCTTCACCATCAATCCCAATGCCTTCACCATCAACCACAATGCCATCAACCACAATGCCTTCACCATCAATCCCAATGCCTTCACCATCAATCCCAATGCCTTCACCATCAACCCCAATGCCTTCACCAACCCCCCCAATTCCACAAGCTAACACTAGAACTGAGTCAATCTCAATGAAAAATCAATGGCAGAAAGGAAAGCTTATTGGCCGGGGCACATTTGGAAGTGTTTATGTTGCAAGCAACAGAGAAAATGGATCTTTATGTGCAATGAAGGAAGTTGAATTATTTCCTGACGATCCAAAATCTGCTGAATGTATAAAGCAATTAGAACAGGAGATAAAGCTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGCAGTGACATTGTTGAAGATAGATTATATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGGAATTTTACTCGTCACATCCTCTCAGGGTTGGCCTACTTGCACAGCACAAAAACTATACACCGGGACATTAAAGGTGCTAATTTGCTTGTGGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTTTAAAGGGAAGTCCTTACTGGATGGCTCCTGAGCTCCTTCTATCTGTGATGCAGAAAGATAACAACTCTGATCTTGCTCTGGCTGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAGCCACCTTGGAGCGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATGCGAGATACCCCGACAATACCTGAATCATTGTCATATGAAGCCAGAGATTTCTTAAAATGTTGCTTTCAGAGAAATCCTGCAGAGAGGCCGACTGCTGCCATGCTGCTTGAACATCCGTTTATGAAAAACTTGCAGCATCCAGATGCTCCATCTTGCTTGCAGGCCGTTGCTGGAGCAAATTTGATGGATAAATGCTATAGTCCAAGTGAACACTATTCAAGTAAATTTGATCAGTCTTCCTTGCTTCCAAGCTCACAAAATTTCAAGGGAAAGTTAGCAGCTGAGAGTGTGATTGGCCCACTATCTCATCATGAAACCTCTGACTTAACAGTAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAGGCTCTTCCAGTATTATCTCCTCCACGCTCAGTTCACAATGTGCATAATCTCGGTTCCCCTGCAAACGCGCTTGGCGCTGGAAATCAAACCAATAAGAAGAACCATACACTAATATAG | 2427 | 47.1 | MRWLRNISFTPSSMVRFPGTATAGDSPSRTSATTASDNHSYRRIAWRFGASKYSRHRKLRNLSGRERNAASLAKWSDSSAEPVSLSRSPSASDDLAVPLPLPEVSPVFQRREGVSNSNSFTGDGDCPLPSPKLWRGRSGDERDVDRDRTAPAPKVGGGASTSAPVKSLFDSRENQKKEDQVETRSSQRVNQDATGYPERSRNRFWIDVPSRSAPTSPYASPTLSPQRNSSGNLSNFHHVAPVGNQDWSAPELPNFHYATPVGNYVWSAPELPASPMMRGVPPAFFDGSTLSCESSPMHSPRGRSPHRDPRSPTGAASPLHTKISLETHGARREGACPINVHPLPLPPGVPMLSSSTPMASPSTPMASPSIPMPSPSTTMPSTTMPSPSIPMPSPSIPMPSPSTPMPSPTPPIPQANTRTESISMKNQWQKGKLIGRGTFGSVYVASNRENGSLCAMKEVELFPDDPKSAECIKQLEQEIKLLSQLKHPNIVQYYGSDIVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNNSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDTPTIPESLSYEARDFLKCCFQRNPAERPTAAMLLEHPFMKNLQHPDAPSCLQAVAGANLMDKCYSPSEHYSSKFDQSSLLPSSQNFKGKLAAESVIGPLSHHETSDLTVMSRYSPRSTLEALPVLSPPRSVHNVHNLGSPANALGAGNQTNKKNHTLI | 808 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 46808189 | 46813570 | + | Lag0013035.1 | Lac1g2543 | 596114 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2543 | 808 | ProSitePatterns | Protein kinases ATP-binding region signature. | 434 | 457 | IPR017441 | GO:0005524(InterPro) | |
Lac1g2543 | 808 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 74 | 695 | IPR050538 | - | |
Lac1g2543 | 808 | Pfam | Protein kinase domain | 429 | 689 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac1g2543 | 808 | MobiDBLite | consensus disorder prediction | 288 | 320 | - | - | |
Lac1g2543 | 808 | ProSiteProfiles | Protein kinase domain profile. | 428 | 689 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac1g2543 | 808 | SMART | serkin_6 | 428 | 689 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac1g2543 | 808 | FunFam | Mitogen-activated protein kinase kinase kinase 5 | 425 | 726 | - | - | |
Lac1g2543 | 808 | MobiDBLite | consensus disorder prediction | 72 | 91 | - | - | |
Lac1g2543 | 808 | MobiDBLite | consensus disorder prediction | 354 | 388 | - | - | |
Lac1g2543 | 808 | MobiDBLite | consensus disorder prediction | 170 | 185 | - | - | |
Lac1g2543 | 808 | MobiDBLite | consensus disorder prediction | 113 | 233 | - | - | |
Lac1g2543 | 808 | MobiDBLite | consensus disorder prediction | 135 | 150 | - | - | |
Lac1g2543 | 808 | MobiDBLite | consensus disorder prediction | 71 | 98 | - | - | |
Lac1g2543 | 808 | MobiDBLite | consensus disorder prediction | 16 | 36 | - | - | |
Lac1g2543 | 808 | MobiDBLite | consensus disorder prediction | 364 | 388 | - | - | |
Lac1g2543 | 808 | MobiDBLite | consensus disorder prediction | 789 | 808 | - | - | |
Lac1g2543 | 808 | Gene3D | Transferase(Phosphotransferase) domain 1 | 424 | 722 | - | - | |
Lac1g2543 | 808 | SUPERFAMILY | Protein kinase-like (PK-like) | 400 | 724 | IPR011009 | - | |
Lac1g2543 | 808 | MobiDBLite | consensus disorder prediction | 213 | 233 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2543 | Lac-Chr1:46808189 | Lac6g0356 | Lac-Chr6:2949106 | 2.20E-138 | dispersed | |
Lac1g2543 | Lac-Chr1:46808189 | Lac11g0043 | Lac-Chr11:370305 | 1.30E-95 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85918 | PF00069 | Pkinase | 7.00E-68 | CL0016 | Lac | PK |
Pathway information
