Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2545 ATGAAGGATAACTCCTCCAAACTTGTTGTTTTCTTGCTTATAAGCTTCTTTTTCTTCAATCAGCTCCTCGTGTCCTCACAACTTGATTATAGGTTTTATGAGGCCTCTTGTCCCAACCTATTAAGGATTGTCAGATATGGCGTCTGGATGGCAGTTTCTAATGATACTAGGATGGCTGCTTCTCTCTTGAGGCTTCATTTTCATGATTGCTTTGTCAACGGCTGTGATGGATCATTGTTGCTTGATGACACTAGCACATTTAAGGGGGAGAAAAATGCATTGCCGAATATGAACTCAGTTCGAGGCTATGAGGTCATTGATAATATAAAGGCTGTTTTAGAGAGAGCCTGCCCATCCATCGTCTCATGTACCGATATAGTAACTCTAGCAGCTAGAGAGGCCGTCTACCTTGCTGGAGGACCATTTTGGCCCATTCCACTTGGTCGCCGAGATGGCACGACAGCGAGCGAGAGTGAAGCCAATCAGCTGCCATCACCAGTGGAGCCATTGGAGAATATCGTTGCAAAGTTCACTTCAAAAGGTCTTGATGTAAAGGATGTTGTTGTGCTCTCAGGTGCACACACTTTTGGATTTGCTCGGTGCATGATGTTCAAGCATAGGATCTTCAACTTCGACGGCTCTGGAAATCCCGATCCAGAACTCGACGTGATGCTACGACAGAACTTACAGAGCACCTGCCCAAATCAAGATGACTCCAACAACAACCTGGCTCCCTTGGACGCCTACACGACCAACAGGTTCGACAATGTGTATTACAGGAACTTGGTGAACAAGTTGGGACTTCTGCAGTCAGACCAAGCCCTCATGAAAGACAATACAACTGCTCCTTTGGTGGTGAACTACAGCAGGTACCCATATCTGTTTTACAGGGACTTTGGAGCATCAATGGTGAAGCTGGCCAATACTGGGATCCTTACAGGCCAAAATGGCGAGATTAGGAAGAACTGCAGGGTCGTGAACTAG 984 46.24 MKDNSSKLVVFLLISFFFFNQLLVSSQLDYRFYEASCPNLLRIVRYGVWMAVSNDTRMAASLLRLHFHDCFVNGCDGSLLLDDTSTFKGEKNALPNMNSVRGYEVIDNIKAVLERACPSIVSCTDIVTLAAREAVYLAGGPFWPIPLGRRDGTTASESEANQLPSPVEPLENIVAKFTSKGLDVKDVVVLSGAHTFGFARCMMFKHRIFNFDGSGNPDPELDVMLRQNLQSTCPNQDDSNNNLAPLDAYTTNRFDNVYYRNLVNKLGLLQSDQALMKDNTTAPLVVNYSRYPYLFYRDFGASMVKLANTGILTGQNGEIRKNCRVVN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 46818589 46820187 + Lag0013037.1 Lac1g2545 596116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2545 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Lac1g2545 327 CDD secretory_peroxidase 27 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac1g2545 327 Gene3D Peroxidase, domain 2 164 306 - -
Lac1g2545 327 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Lac1g2545 327 PANTHER PEROXIDASE 72-RELATED 17 326 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 Gene3D - 31 327 - -
Lac1g2545 327 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 Pfam Peroxidase 45 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 ProSiteProfiles Plant heme peroxidase family profile. 27 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 SUPERFAMILY Heme-dependent peroxidases 27 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g2545 327 FunFam Peroxidase 164 306 - -
Lac1g2545 327 FunFam Peroxidase 31 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2545 Lac-Chr1:46818589 Lac9g2881 Lac-Chr9:46741595 2.30E-94 dispersed
Lac4g1791 Lac-Chr4:36907233 Lac1g2545 Lac-Chr1:46818589 6.50E-54 dispersed
Lac10g0621 Lac-Chr10:4761504 Lac1g2545 Lac-Chr1:46818589 1.50E-67 transposed
Lac9g2303 Lac-Chr9:42385509 Lac1g2545 Lac-Chr1:46818589 7.70E-69 transposed
Lac1g2545 Lac-Chr1:46818589 Lac9g1594 Lac-Chr9:35150553 1.40E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2545 K00430 - csv:101218459 604.364