Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2575 ATGAATTCCATGGAGTGGATTCGAGGAGATGAAATTGGACATGGCAGTTTCGCGACGATCAATTTAGCGATGCCTTCGAAGACTTGTGGAGCTCGGTTTCCTCCATTAATGGCGGTTAAATCGTCTGGAGCTCTCTGCTCTGCCTCGCTTAAGAACGAGAAGCAAGTTTTGGATCTTTTGGGCGATTGCCCACAAATTATTCGCTGTTTTGGTGAGAGCTGCAGCGTCGAGAACGGCCAGGAGTTTTACAATTTGTTTCTTGAGTATGCCAGTGGTGGGAGTTTAGCCGACAGGATACAGAGCCGCGGTGGTCGGCTGCCGGAATTTGAGGTTCGGCGGTACACCAGGACGATTCTCGAAGGGCTTCGGTATATTCACGGGAAAGGGTTTGTTCACTGCGATGTAAAGCCTCGGAATATTCTCGTGTTTGGTGACGGTGATGCTAAGATTGCTGATTTCGGATTGTCGAAGAAGGCGGGAGAAAACAGAGCAGAAACAGAGGAAGAGGGGAGATTTCAATTGAGAGGCTCTCCTCTGTACATGTCGCCGGAATCGGTCAACGACAACGAGTACGAGTCGCCGTGTGACATATGGGCCGTCGGATGCGCGGTGGTGGAGATGTTGACCGGAAAACCGGCCTGGAATTGCCTGCCGGAATCCAACATCTATTCTCTGTTACTCAAAATTGGGATCGGAGAGGAATTGCCGGAAATTCCTAAAGATCTATCCGAGGAAGGGAAAGATTTTCTGGGTAAATGCTTGGTAAAGGATCCTGCAAAGAGATGGACGGCTGAGATGCTTTTAAATCACCCGTTCATGGCAGACTCCGGCAGCTCTGTTCCATTGACGGACAAGGACGAACCATCAACGTCGCCGAGATGCCCTTTCGATTTCGAAGATTGGGCATCGGTTCACTCACAAGAGGTCGATCAGAGATTTGAAGAGGAATCAAAATTTTGGTTGGATTCGTCGTGTTCGTGGTCGTCTTCCCCGACGGAGCGGCTGCTGGAGCTAGTGGACAATGGGACAGCTGATTGGTCCGTCAGTGACAGTTGGGTCACCGTCAGATGA 1071 50.33 MNSMEWIRGDEIGHGSFATINLAMPSKTCGARFPPLMAVKSSGALCSASLKNEKQVLDLLGDCPQIIRCFGESCSVENGQEFYNLFLEYASGGSLADRIQSRGGRLPEFEVRRYTRTILEGLRYIHGKGFVHCDVKPRNILVFGDGDAKIADFGLSKKAGENRAETEEEGRFQLRGSPLYMSPESVNDNEYESPCDIWAVGCAVVEMLTGKPAWNCLPESNIYSLLLKIGIGEELPEIPKDLSEEGKDFLGKCLVKDPAKRWTAEMLLNHPFMADSGSSVPLTDKDEPSTSPRCPFDFEDWASVHSQEVDQRFEEESKFWLDSSCSWSSSPTERLLELVDNGTADWSVSDSWVTVR 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47116554 47117624 + Lag0013067.1 Lac1g2575 596146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2575 356 SMART serkin_6 6 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2575 356 Gene3D Transferase(Phosphotransferase) domain 1 97 319 - -
Lac1g2575 356 CDD STKc_MAPKKK 5 272 - -
Lac1g2575 356 ProSiteProfiles Protein kinase domain profile. 6 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2575 356 SUPERFAMILY Protein kinase-like (PK-like) 6 300 IPR011009 -
Lac1g2575 356 Pfam Protein kinase domain 9 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2575 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2575 356 ProSitePatterns Protein kinases ATP-binding region signature. 12 40 IPR017441 GO:0005524(InterPro)
Lac1g2575 356 Gene3D Phosphorylase Kinase; domain 1 2 96 - -
Lac1g2575 356 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 274 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2575 Lac-Chr1:47116554 Lac9g2041 Lac-Chr9:40031485 2.70E-61 dispersed
Lac1g2575 Lac-Chr1:47116554 Lac9g1241 Lac-Chr9:28812375 3.00E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85920 PF00069 Pkinase 6.80E-54 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2575 - - - 0.0