Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2579 ATGTCTGATCACAAATCAGGCTCCATGACCGACCAGCTCTCCAAGCAGACCTCTATTTTTGGCCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTTGGAGCCGCTTTTGTGCTTTTTCTGTTTCTAATTTCTCTTTGGATTGCCTCCAAACGCTCTCGCAGGAAGATTTCTCACAGACCCACAATTCCAATCGTCTCCAAAGAAATCCAGGAGATCAGAATCGATCATGCCCTCGCTCAGAACCATGAACATAAGCCTAGTAGAGCCCATTTTCAGGTCGACCCTCTTCCGGAACCGGAGCCAATCCCCGGAATTGAGCGGCAAGCGCTGCTTTCGTTGCCTCAGGAGGAAGAGCGAGTGAATAGGATTCATATTGAGATAGGGAAGGATCATAGGATTTCATATCCTGAGCGACTTGGTCGGTCGTCTTCCTCACAGGGCAGTGGAGAGGGCCGATGTGGTGGCGATCAGTTGCCTATGGTGGTGCCTGAAGTTTCGCATTTGGGTTGGGGGCATTGGTACACTCTCAGGGAGCTCGAAGCTTCCACTAATGGTTTTGCACCTGATAACGTAATCGGTGAAGGTGGGTATGGAATTGTTTACCATGGCATTTTAGAGGATGGGACTCAGGTTGCTGTTAAGAATTTGCTAAACAATAGGGGACAAGCCGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTCAGACATAAGAACTTGGTTAGATTGCTCGGATACTGTGCTGAAGGTGCTCATAGGATGCTTGTATATGAGTACATAAATAATGGAAACTTGGAACAATGGCTTCATGGGGATGTAGGATCTTTCAGTCCTCTTACCTGGGAGATTAGAATGAATATCATTCTTGGAACCGCAAAAGGGCTAGCTTACCTTCACGAAGGTTTGGAACCAAAGGTTGTTCACCGGGATATTAAATCAAGCAACATCTTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTATGCTCTGATAACAGCTACATTACAACACGAGTGATGGGGACATTTGGCTATGTAGCACCAGAGTATGCAAGTACAGGCATGCTAAATGAAAGAAGTGATGCGTATAGTTTTGGAATACTTGTTATGGAAATAATCTCAGGAAGGAACCCTGTTGACTATAGTCGCCCTCCAGATGAGGTGAACTTGATTGATTGGCTTAAGAGAATGGTCAGTAACCGGAATCCAGAAGGCGTATTGGATCCAAAGCTCTCTGAAAAGCCTACTTCAAGAGCATTAAAGCGGGCTCTTCTTGTTGCATTGCGTTGCGTGGACCCAAATGCTCAAAAGCGGCCAAAAATGGGACACATTATTCATATGCTTGAAGCTGAAGAGGCTACCTTTAAAGGGGATCGCAAGGCTGGAAAGGACCCAGAGAACTCACATTCAGACAATGTGAAGGATGGTTTAAATGAGAGGCAGGCGACAGAATTAGGTGGCAGCAATGGGGATGAACTCGATACTCGACAATGA 1521 45.83 MSDHKSGSMTDQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRRKISHRPTIPIVSKEIQEIRIDHALAQNHEHKPSRAHFQVDPLPEPEPIPGIERQALLSLPQEEERVNRIHIEIGKDHRISYPERLGRSSSSQGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDAYSFGILVMEIISGRNPVDYSRPPDEVNLIDWLKRMVSNRNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEEATFKGDRKAGKDPENSHSDNVKDGLNERQATELGGSNGDELDTRQ 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47136939 47139550 - Lag0013071.1 Lac1g2579 596150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2579 506 Pfam Protein kinase domain 190 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2579 506 PANTHER OS01G0323000 PROTEIN 7 485 IPR052232 -
Lac1g2579 506 Gene3D Transferase(Phosphotransferase) domain 1 262 472 - -
Lac1g2579 506 MobiDBLite consensus disorder prediction 464 506 - -
Lac1g2579 506 ProSiteProfiles Protein kinase domain profile. 186 464 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2579 506 FunFam Putative receptor-like serine/threonine-protein kinase 262 472 - -
Lac1g2579 506 MobiDBLite consensus disorder prediction 464 487 - -
Lac1g2579 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2579 506 FunFam Probable serine/threonine-protein kinase At1g01540 166 261 - -
Lac1g2579 506 SUPERFAMILY Protein kinase-like (PK-like) 167 458 IPR011009 -
Lac1g2579 506 CDD STKc_IRAK 192 458 - -
Lac1g2579 506 ProSitePatterns Protein kinases ATP-binding region signature. 192 214 IPR017441 GO:0005524(InterPro)
Lac1g2579 506 Gene3D Phosphorylase Kinase; domain 1 167 261 - -
Lac1g2579 506 SMART serkin_6 186 457 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2579 Lac-Chr1:47136939 Lac7g0210 Lac-Chr7:1667519 6.70E-170 dispersed
Lac1g2579 Lac-Chr1:47136939 Lac6g0288 Lac-Chr6:2359709 1.10E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85921 PF00069 Pkinase 2.70E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2579 - - - 0.0