Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2580 ATGGACCATTCCATTTCCAACAAATGCGATCAAAATGCATGTACTTCTTCAACGTGGATTCCCCCCACCGCCGCCGCCGTCTCCTCCTCCTCCTCCCCTCCAGACGAAATCTCTCTATTTCTGCAACAGATTTTGCTACGTTCCTCTTCCGCTACTCCCAACTCCTCTCCCTCCATCTTCTCCGAGCTCACCTGCAACATTAGAGCCTTCACCCCCCTGTCCCATAACATCCCCCCTTCTTATGGGCCGCCTACTGCAGTGCCCGACGAGATCTCCGCCGTCGATTCTTCAGAACAATTTGCAAATTCCTCCTCATCCAGTGTACTGTATGATCCGTTGCGCTCTTGTCCCACGCCCACTGCTCCTAATGCGTCTTCTACGTCGGTTGGAGCCAGTGATCACAACGAAAACAATGAGTTCGACTGCGAAAGTGAGGAGGGTCTGGAGCCATTGGTTGAAGACCAGCCTACAAAGCCTAATCCTCGCAGTTCTTCCAAGAGAAGCAGAGCCGCCGAAGTTCATAATCTCTCTGAAAAGAGAAGAAGGAGCAGAATTAACGAGAAAATGAAGGCCCTGCAAAATCTGATCCCCAATTCTAACAAGACAGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGACATGGCTTGAGTTTACATCCTATGAACTTACCTGGAAGTTTGCAATATCTCCAACTTTCCCACATGAGAATGGACTTTGGTGAAGAAAACAGGTCACTTCCTTCTGGCCGAGAGAGACCAAACCAGATTTTTCTGAGTTTGCCTGATCAAAAGGCTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGTAGAAACTCCATTTGAATTGGTCCCGCCCGTCCAGGCTCACCTAGTCCCCTTTTACTTGAGTGAATCTTCCAAGGAGATTTGCAGAGATGTGCTGCGAGATCCCCAAGTGAATGTGAGCCAATTGGAGATGACTCCCTTCGTGTCACGCTCCTATAACATACCAGCGCCAGATTTAGAAGAATTACAGAATGGCGTCTCAATAGAACCGTGCATCATTCAAGGAAATCGGTCAGGTGTGCTTCTAAACACTCCAGAGCACAGCCTTTTGAATGGCATTGACACAGGAAGACCAACTGAAACAACAGAGCTGCAATGA 1200 48.25 MDHSISNKCDQNACTSSTWIPPTAAAVSSSSSPPDEISLFLQQILLRSSSATPNSSPSIFSELTCNIRAFTPLSHNIPPSYGPPTAVPDEISAVDSSEQFANSSSSSVLYDPLRSCPTPTAPNASSTSVGASDHNENNEFDCESEEGLEPLVEDQPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRHGLSLHPMNLPGSLQYLQLSHMRMDFGEENRSLPSGRERPNQIFLSLPDQKAASIHPFMSDIGRTNVETPFELVPPVQAHLVPFYLSESSKEICRDVLRDPQVNVSQLEMTPFVSRSYNIPAPDLEELQNGVSIEPCIIQGNRSGVLLNTPEHSLLNGIDTGRPTETTELQ 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47142379 47144281 - Lag0013072.1 Lac1g2580 596151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2580 399 Gene3D - 164 229 IPR036638 GO:0046983(InterPro)
Lac1g2580 399 MobiDBLite consensus disorder prediction 95 135 - -
Lac1g2580 399 FunFam Basic helix-loop-helix transcription factor 164 227 - -
Lac1g2580 399 Coils Coil 208 228 - -
Lac1g2580 399 MobiDBLite consensus disorder prediction 165 184 - -
Lac1g2580 399 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 33 317 IPR031066 GO:0005634(PANTHER)
Lac1g2580 399 Pfam Helix-loop-helix DNA-binding domain 172 219 IPR011598 GO:0046983(InterPro)
Lac1g2580 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 229 IPR036638 GO:0046983(InterPro)
Lac1g2580 399 CDD bHLH_AtPIF_like 169 231 IPR047265 -
Lac1g2580 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983(InterPro)
Lac1g2580 399 SMART finulus 175 224 IPR011598 GO:0046983(InterPro)
Lac1g2580 399 MobiDBLite consensus disorder prediction 77 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2580 Lac-Chr1:47142379 Lac2g1038 Lac-Chr2:8241488 6.10E-25 dispersed
Lac1g2580 Lac-Chr1:47142379 Lac2g0328 Lac-Chr2:2450276 2.80E-06 wgd
Lac1g2580 Lac-Chr1:47142379 Lac6g0252 Lac-Chr6:2037952 1.80E-08 wgd
Lac1g2580 Lac-Chr1:47142379 Lac6g0287 Lac-Chr6:2351705 1.10E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23307 PF00010 HLH 4.70E-14 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2580 - - - 0.0