Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2583 ATGTGGGATCTGAACGATTGTCCTGAGGAGAGGGAGGAGGAGGAATGGGAAGCGTGTTCGGGAGACGAGAAAGGGAAAAGGGTGGGATCGGTTTCTAATTCCAGTTCCTCCGCCGTGGTTGTGGAGGATGGATCCGATGACGAACAACCAAGCCCCAACCATATGGATATGCTCATGCAAATTGACTCTACTCCCACCCCGTCGTCACTCGCCAGTTTTTCCCACTCGACCAACCTCAACTTTCTCCTCCCTTTCCATCTACTACTACCACTTCCGCCTTCCCTCCAGCTCACTGGGTTGGGGTCAAATTTGCCCATCCCGATCCCCTCGCCCCCAATAATTCCATCAACCCCACCGACCTCTCCCACCCCATTAAGAAGAGCCGCCGCGGACCAAGGTCCCGTAGCTCTCAGTACCGCGGCGTCACTTTCTACCGGAGGACCGGCCGCTGGGAGTCGCATATTTGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGAGCGGCCATTAAATTCCGAGGAGTTGAAGCGGACATAAACTTCAGCATCGAAGATTACGAGGAGGATTTAAAACAGATGGGAAATCTAACGAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGGTTTCCCAGAGGAAGCTCCAAGTATAGAGGTGTAACGCTTCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTTGATACGGAGATTGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTTGATCCCAGCATCTACGACAATGAACTGAATCCGACAACTGTCAAAATTTATTTTTTGAAATTCACATTACACAGATTCAATTGGCAGTTTGGGGATCACAGTCTTGATTTGAGTTTGGGAAATTCAAGCTCAAAGCAAAACGACAGCCCAAATGCCTCCATAGATCCACACCATTCTTCTTCAGCTTCTCTATCCATGGAACCTGACTGGCAACGCAATCAAGGATTTAGGCCTCCACCTCAGCTAAATTTGCTGCAAGAGTCAAGTGGAGGAGGAGGAGGAGGTGGTGGGAACAAAAATTACAATAATGCACTTGCACAGAGAAGAAATAGTAGGTACCTGGAGAGTGAAACCATGCAGCTGCTGAGCCAAACGCACATTCAATCTCCAGCTTCGTTTGAAATGCAAAGACACGGGCAATTCAGCCGGGCGGCGGCTGGTGGAGATCAGCCCCACTCTCAAATATTGATTCAGAATCACCACCCAAGCCTCAATTATCAAATTCAGTTTTCGAGCAGCAGTAATGGAAGCCGAATAGGAAGTGATCTATCACTGTCTCTAAGTGATCATAATCAACTTCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCAGATTAGACCTTCCAAAAATTGGCTGCAGAAGAATGGGTTTCACTGTCTCATGAGACCCTCCTGA 1536 48.44 MWDLNDCPEEREEEEWEACSGDEKGKRVGSVSNSSSSAVVVEDGSDDEQPSPNHMDMLMQIDSTPTPSSLASFSHSTNLNFLLPFHLLLPLPPSLQLTGLGSNLPIPIPSPPIIPSTPPTSPTPLRRAAADQGPVALSTAASLSTGGPAAGSRIFGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNPTTVKIYFLKFTLHRFNWQFGDHSLDLSLGNSSSKQNDSPNASIDPHHSSSASLSMEPDWQRNQGFRPPPQLNLLQESSGGGGGGGGNKNYNNALAQRRNSRYLESETMQLLSQTHIQSPASFEMQRHGQFSRAAAGGDQPHSQILIQNHHPSLNYQIQFSSSSNGSRIGSDLSLSLSDHNQLLQSGPSQVLATAAASSGFAPQIRPSKNWLQKNGFHCLMRPS 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47196586 47199148 - Lag0013075.1 Lac1g2583 596154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2583 511 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 151 353 - -
Lac1g2583 511 ProSiteProfiles AP2/ERF domain profile. 155 185 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2583 511 ProSiteProfiles AP2/ERF domain profile. 221 278 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2583 511 MobiDBLite consensus disorder prediction 1 70 - -
Lac1g2583 511 MobiDBLite consensus disorder prediction 317 380 - -
Lac1g2583 511 SUPERFAMILY DNA-binding domain 220 280 IPR016177 GO:0003677(InterPro)
Lac1g2583 511 SUPERFAMILY DNA-binding domain 154 186 IPR016177 GO:0003677(InterPro)
Lac1g2583 511 FunFam AP2-like ethylene-responsive transcription factor 220 280 - -
Lac1g2583 511 PRINTS Ethylene responsive element binding protein signature 222 233 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2583 511 PRINTS Ethylene responsive element binding protein signature 260 280 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2583 511 MobiDBLite consensus disorder prediction 27 42 - -
Lac1g2583 511 SMART rav1_2 221 284 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2583 511 SMART rav1_2 144 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2583 511 CDD AP2 220 280 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2583 511 Pfam AP2 domain 220 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2583 511 Gene3D AP2/ERF domain 220 279 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2583 511 Gene3D AP2/ERF domain 141 187 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2583 511 MobiDBLite consensus disorder prediction 56 70 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2583 Lac-Chr1:47196586 Lac9g2541 Lac-Chr9:44060890 5.50E-63 dispersed
Lac1g2583 Lac-Chr1:47196586 Lac9g1138 Lac-Chr9:26659016 6.90E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23308 PF00847 AP2 3.50E-10 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2583 K09284 - csv:101214724 509.99