Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2587 ATGGACGGCGGAGGAGAGCCAGGGCGGGACGGCACCAGAAAGAGAGGCGTCGACAATCACAGGCCTTACAAAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAGCGCTCCAGGATTTGGCTCGGCTCTTACTCTTCTCCTGTCGCCGCCGCCAGGGCCTACGATACGGCTGTCTTTTACCTCAGAGGCCCCTCCGCCAGGCTTAATTTTCCAGAGTTGTTGGCTGGGGAAGGCCGCGGAATTAGCGGCGGCGGCGGCGGCGACATGTCGGCGGCTTCCATACGGAAGAAAGCGACGGAGGTGGGGGCTCGAGTGGATGCTCTGGAGAGTTCGTTGGGTCAACACCAACACAGTCACAACAATCGGAGCCATCACCATCCAAACGCATCGGCGTCTCCGCCAGAGATGAAAGGGTGCAGCGGGTTTTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGAAGCCGATGGGGAGTTCGAGTGGGAGAGACACTGA 531 58.57 MDGGGEPGRDGTRKRGVDNHRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGISGGGGGDMSAASIRKKATEVGARVDALESSLGQHQHSHNNRSHHHPNASASPPEMKGCSGFLDRVDLNKLPDPEEEEADGEFEWERH 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47233767 47234297 - Lag0013079.1 Lac1g2587 596158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2587 176 CDD AP2 23 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2587 176 MobiDBLite consensus disorder prediction 1 21 - -
Lac1g2587 176 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677(InterPro)
Lac1g2587 176 SMART rav1_2 22 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2587 176 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2587 176 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2587 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 17 167 - -
Lac1g2587 176 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2587 176 MobiDBLite consensus disorder prediction 119 176 - -
Lac1g2587 176 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Lac1g2587 176 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2587 176 Pfam AP2 domain 23 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2587 176 MobiDBLite consensus disorder prediction 6 21 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2587 Lac-Chr1:47233767 Lac9g1143 Lac-Chr9:26787981 3.00E-45 dispersed
Lac1g2587 Lac-Chr1:47233767 Lac2g0341 Lac-Chr2:2553917 9.50E-39 wgd
Lac1g2587 Lac-Chr1:47233767 Lac6g0284 Lac-Chr6:2305823 1.30E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23309 PF00847 AP2 2.30E-11 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2587 K09286 - csv:101214481 247.669