Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2600 ATGGATAATGGAACTTCTAATAGTTCAACACAATCTGCAGCTAACAATTCAGCTCCAACTGTCCAAAGGCAAAATAGTAAAGGAGACAATTTGACATCTATTTTATCTCCGTCTGGAATCTCATCTTGGGCTAAGAGTTTTAGAAATCCACAACCACCTGAAGCAGCAGAAAATGATTCCAAGGCAGGAAATGCTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGCTTTGGATTGCGGATACCTTCAATGTCTCCTGTACGAAATGATGGTGCAGCAGATACCACATCAGCAACGCAATCTGGTGTTTTTGAATCATTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAGGCACGCCATATTGTCTCCCAAAACAAACGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACTGAAAATATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTTGGATTCCTCGAGGGATTTTATAGAAATCATATGGAAGAAGTGATCAAGTTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATTATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATCGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCAATTGACTATTATAATCAGAAAAGATGCGTGGATGGAAAGGCTTTGGTTCTTCCTAGCCAGATTAGATATGTCAAGTATTTTGAGCGCATTCTAACACATTTCAACGGAAATACTCCACCTGGACGGAGGTGCATGCTGAGAGGTTTCCGGCTTCACAAGTGCCCGTATTGGGTCAGGCCTTCCATTACAATATCAAATCACAGTGAGATTTTATTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCGCCAAAGAAAGGATTTGTGGTCTTTGCACTGCCAGGTGAGCCTGGTTTAACAGAGTTGTCTGGGGACTTCAAGATTCATTTTCATGACCGGCATGGAGATTTTTACTGCTGGCTAAATACAACAATGACAGAAAACAAATTTTTATTGAGTGACACAGATCTTGATGGCTTTGATAAGAGAAAACTCCCTACTCCTGGATTCCAGGTCGAAGTTGTGATGATTGACTATGATGGTACTCTGCCAACACGATTGAAAACTAATTCTGCTGGCAAAGGATCTGATCGTCGCTCTATTCACGATCGGGCATCAGGTCCTGAAGCCCAATCTAGCAAAAATAAAATTCCCGAGGTTGAAGAAAATGATGACAATGTATTCTCTGATAGTGATGAAGAAAATAGTGACCCGAAGACCAGTCTAGCTCAATCAATTTCTGGTACTGGAACTGCAAAAGCTGACCATTCATCAACAGCAATTGCTTCTGAAAAAATTGGAAGTTTAGCGCATGAAACTAGCCGTTTGTCACTCGGGAATGAAAAAAACACACAAACTAATGCTCCAAAAGAACCAAACTTTGATAGCGTGATACAATCGTCAAGCCTTGAGACCCCGAATTTGGATTCAGTAAGGGCAAGTGACTTCAAGGCAATAGCAGCTGATGCGTCAGTTTTCACTTTTGGGGATGAAGAAGACTTTGATAGTGAATGA 1821 40.36 MDNGTSNSSTQSAANNSAPTVQRQNSKGDNLTSILSPSGISSWAKSFRNPQPPEAAENDSKAGNAGMSAIARFSSGFGLRIPSMSPVRNDGAADTTSATQSGVFESFTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKLFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKFLLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGTLPTRLKTNSAGKGSDRRSIHDRASGPEAQSSKNKIPEVEENDDNVFSDSDEENSDPKTSLAQSISGTGTAKADHSSTAIASEKIGSLAHETSRLSLGNEKNTQTNAPKEPNFDSVIQSSSLETPNLDSVRASDFKAIAADASVFTFGDEEDFDSE 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47343274 47347282 + Lag0013092.1 Lac1g2600 596171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2600 606 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 120 317 - -
Lac1g2600 606 SMART PTEN_C2_2 319 447 IPR014020 -
Lac1g2600 606 MobiDBLite consensus disorder prediction 1 48 - -
Lac1g2600 606 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311(InterPro)
Lac1g2600 606 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 122 553 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Lac1g2600 606 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311(InterPro)
Lac1g2600 606 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 214 269 - -
Lac1g2600 606 MobiDBLite consensus disorder prediction 507 533 - -
Lac1g2600 606 CDD PTP_PTEN 145 310 IPR045101 GO:0016791(InterPro)
Lac1g2600 606 ProSiteProfiles Phosphatase tensin-type domain profile. 135 314 IPR029023 -
Lac1g2600 606 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 315 IPR029021 -
Lac1g2600 606 ProSiteProfiles C2 tensin-type domain profile. 321 448 IPR014020 -
Lac1g2600 606 Pfam PTEN2, C2 domain 321 449 - -
Lac1g2600 606 MobiDBLite consensus disorder prediction 542 569 - -
Lac1g2600 606 Gene3D Protein tyrosine phosphatase superfamily 120 317 IPR029021 -
Lac1g2600 606 MobiDBLite consensus disorder prediction 1 62 - -
Lac1g2600 606 MobiDBLite consensus disorder prediction 454 569 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2600 K01110 - - csv:101213277 1067.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0225 Lac-Chr12:2464348 Lac1g2600 Lac-Chr1:47343274 8.00E-202 dispersed
Lac1g2600 Lac-Chr1:47343274 Lac8g0876 Lac-Chr8:17102516 5.70E-43 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac2g2055 . 84 237 Protein tyrosine phosphatase (PTP) family AT1G71860 56.8 4.2e-43 172.9
Lac3g0027 . 1 760 Protein tyrosine phosphatase (PTP) family AT5G23720 66.4 8.1e-275 944.1
Lac12g2326 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 9.3e-44 174.1
Lac12g0829 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 5.1e-72 268.1
Lac13g0651 . 140 324 Protein tyrosine phosphatase (PTP) family AT3G52180 75.7 8.6e-82 301.2
Lac13g1219 . 33 282 Protein tyrosine phosphatase (PTP) family AT3G10940 71.5 4.5e-107 385.2
Lac8g0287 . 29 477 Protein tyrosine phosphatase (PTP) family AT3G01510 73.3 1.6e-204 709.5
Lac9g2220 . 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.2e-74 277.3
Lac12g0819 . 33 241 Protein tyrosine phosphatase (PTP) family AT2G32960 63.4 6.6e-73 271.6
Lac5g0369 . 1 332 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 7.7e-98 354.8
Lac6g3049 . 12 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 2.5e-80 296.6
Lac6g3049 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.1e-45 180.6
Lac9g2220 . 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 70.8 4.4e-77 285.0
Lac12g0819 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.1e-70 263.8
Lac3g1690 . 120 291 Protein tyrosine phosphatase (PTP) family AT4G03960 57.0 1.3e-55 213.8
Lac3g1690 . 115 304 Protein tyrosine phosphatase (PTP) family AT3G02800 70.0 6.3e-79 291.2
Lac9g2220 . 34 206 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 9.9e-56 214.2
Lac12g0819 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 5.6e-51 198.4
Lac13g0933 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.4e-62 238.8
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac12g0225 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 5.1e-217 751.5
Lac1g2600 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.7 1.6e-202 703.4
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac9g2686 . 17 246 Protein tyrosine phosphatase (PTP) family AT3G44620 56.3 3.7e-71 265.8
Lac5g0274 . 23 309 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 3.7e-107 385.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83