Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2600 ATGGATAATGGAACTTCTAATAGTTCAACACAATCTGCAGCTAACAATTCAGCTCCAACTGTCCAAAGGCAAAATAGTAAAGGAGACAATTTGACATCTATTTTATCTCCGTCTGGAATCTCATCTTGGGCTAAGAGTTTTAGAAATCCACAACCACCTGAAGCAGCAGAAAATGATTCCAAGGCAGGAAATGCTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGCTTTGGATTGCGGATACCTTCAATGTCTCCTGTACGAAATGATGGTGCAGCAGATACCACATCAGCAACGCAATCTGGTGTTTTTGAATCATTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAGGCACGCCATATTGTCTCCCAAAACAAACGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACTGAAAATATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTTGGATTCCTCGAGGGATTTTATAGAAATCATATGGAAGAAGTGATCAAGTTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATTATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATCGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCAATTGACTATTATAATCAGAAAAGATGCGTGGATGGAAAGGCTTTGGTTCTTCCTAGCCAGATTAGATATGTCAAGTATTTTGAGCGCATTCTAACACATTTCAACGGAAATACTCCACCTGGACGGAGGTGCATGCTGAGAGGTTTCCGGCTTCACAAGTGCCCGTATTGGGTCAGGCCTTCCATTACAATATCAAATCACAGTGAGATTTTATTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCGCCAAAGAAAGGATTTGTGGTCTTTGCACTGCCAGGTGAGCCTGGTTTAACAGAGTTGTCTGGGGACTTCAAGATTCATTTTCATGACCGGCATGGAGATTTTTACTGCTGGCTAAATACAACAATGACAGAAAACAAATTTTTATTGAGTGACACAGATCTTGATGGCTTTGATAAGAGAAAACTCCCTACTCCTGGATTCCAGGTCGAAGTTGTGATGATTGACTATGATGGTACTCTGCCAACACGATTGAAAACTAATTCTGCTGGCAAAGGATCTGATCGTCGCTCTATTCACGATCGGGCATCAGGTCCTGAAGCCCAATCTAGCAAAAATAAAATTCCCGAGGTTGAAGAAAATGATGACAATGTATTCTCTGATAGTGATGAAGAAAATAGTGACCCGAAGACCAGTCTAGCTCAATCAATTTCTGGTACTGGAACTGCAAAAGCTGACCATTCATCAACAGCAATTGCTTCTGAAAAAATTGGAAGTTTAGCGCATGAAACTAGCCGTTTGTCACTCGGGAATGAAAAAAACACACAAACTAATGCTCCAAAAGAACCAAACTTTGATAGCGTGATACAATCGTCAAGCCTTGAGACCCCGAATTTGGATTCAGTAAGGGCAAGTGACTTCAAGGCAATAGCAGCTGATGCGTCAGTTTTCACTTTTGGGGATGAAGAAGACTTTGATAGTGAATGA 1821 40.36 MDNGTSNSSTQSAANNSAPTVQRQNSKGDNLTSILSPSGISSWAKSFRNPQPPEAAENDSKAGNAGMSAIARFSSGFGLRIPSMSPVRNDGAADTTSATQSGVFESFTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKLFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKFLLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGTLPTRLKTNSAGKGSDRRSIHDRASGPEAQSSKNKIPEVEENDDNVFSDSDEENSDPKTSLAQSISGTGTAKADHSSTAIASEKIGSLAHETSRLSLGNEKNTQTNAPKEPNFDSVIQSSSLETPNLDSVRASDFKAIAADASVFTFGDEEDFDSE 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47343274 47347282 + Lag0013092.1 Lac1g2600 596171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2600 606 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 120 317 - -
Lac1g2600 606 SMART PTEN_C2_2 319 447 IPR014020 -
Lac1g2600 606 MobiDBLite consensus disorder prediction 1 48 - -
Lac1g2600 606 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311(InterPro)
Lac1g2600 606 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 122 553 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Lac1g2600 606 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311(InterPro)
Lac1g2600 606 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 214 269 - -
Lac1g2600 606 MobiDBLite consensus disorder prediction 507 533 - -
Lac1g2600 606 CDD PTP_PTEN 145 310 IPR045101 GO:0016791(InterPro)
Lac1g2600 606 ProSiteProfiles Phosphatase tensin-type domain profile. 135 314 IPR029023 -
Lac1g2600 606 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 315 IPR029021 -
Lac1g2600 606 ProSiteProfiles C2 tensin-type domain profile. 321 448 IPR014020 -
Lac1g2600 606 Pfam PTEN2, C2 domain 321 449 - -
Lac1g2600 606 MobiDBLite consensus disorder prediction 542 569 - -
Lac1g2600 606 Gene3D Protein tyrosine phosphatase superfamily 120 317 IPR029021 -
Lac1g2600 606 MobiDBLite consensus disorder prediction 1 62 - -
Lac1g2600 606 MobiDBLite consensus disorder prediction 454 569 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0225 Lac-Chr12:2464348 Lac1g2600 Lac-Chr1:47343274 8.00E-202 dispersed
Lac1g2600 Lac-Chr1:47343274 Lac8g0876 Lac-Chr8:17102516 5.70E-43 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2600 K01110 - csv:101213277 1067.37