Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g2613 | ATGGCAGATTTCTCTCTGCTTTTCCTTTTTCTCTCGCTTATCTCTCTCCTCTTCGCTTTCAACCTCCGCCGTCGCACAAACTTACCGCCGACTCCGCCCTCCCTTCCGATCATCGGCCACCTCCATTATCTCAAAGTCCCCGTCCACCGAACTTTCCAGAAGCTCTCTGCAAAATACGGTCCAGTGATCTCTCTCCGCCTCGGATCTCGCCTCGTGGTGGTCATATCGTCGTCGTCGGCGGTGGAGGAGTGCTTCACTAAGAACGACGTCGTTCTGGCGAACCGTCCCCGGTCGCTACTCGGCAAACACGTGGGCTACAACCACACTACGATGGTGGCGTCGCCGTACGGCGACCACTGGCGGAACCTCCGCCGAATCGGCGCGATCGAGATCTTCTCGACGTCTCGCCTGAACAAATTTGGCGGAATCCGGAGGGACGAAGTGGAGCGGTTACTGAGGAAGCTTTCGAGGAATTCTCTCCATGGATTCTCGAAGGTACATTTGCAATCGGCGACTTCGGAACTGACGTTTAACATCTCGATGAGAATGGCGGCCGGGAAGAGGTATTTCGGCGACGACGTGACGGACGAGGACGAGGCGAGGCAGTCGAGAGAGTTGATTAAACAGATTGTTGCGGTGGGAGGAGTATCGAATCTTGGAGATTTCATTCCGATGCTGAATTGGATTCTGAACGGTTACGAGAGGAAGGTTTCGAGGCTTGCGAAGAGGATGGACGCGTTCTTGCAGGGACTGATCGACGAACATCGGAGCAACAAGGAAGAGGGAAGGAACACGTTGATCGATCACTTGCTCTCTCTGCAGGAATCGGAGCCTGCCTACTATGGAGATCCATTAATCAAAGGATTCATTCTCGTGTTAATAATAGCAGGAACCGACACATCAGCGGTGACAATTGAATGGGCTCTAGCTCACTTGCTCAACAATCCCGAGGTACTCAAGAAGGCTAGAGAGGAGCTCGACACTCAGATTGGACAAGAACGACTAATCGAAGAATCAGACGTGCCCAAATTACCATATCTTCAAAGAATCATCTTTGAGACTCTTCGGCTAAACCCAGCTGCTCCAATGCTGCTGCCACACCTCACCTCTGACGATTGCACAATAAGCGGGTACGAAATACCACAAAACACAATTGTATTGGTGAATGCATGGGCTATCCATAGAGATCCTAACCAATGGGAAGAGCCCACACAATTCAAACCAGAAAGACACCAAAAATCAGAAGGTGATCAGGTGCACAAGTTGGTTCCATTTGGAGTTGGACGACGAGCCTGCCCAGGGTCAGGCATGGCGCAGCGGGTGGTGGGTTTGGCTCTAGGGGCGCTGATTCAGTGCTACGAGTGGGAGAGGATTGACAAAGAGGAGGTGGACATGACCGAGCTGGTAAGAGGTGTCATTATGCCCAAAGCAGTGCCACTGGAAGCCATGTGCAAAGCTCGTCGTATCATCCACAACCTCTTTTGA | 1485 | 52.05 | MADFSLLFLFLSLISLLFAFNLRRRTNLPPTPPSLPIIGHLHYLKVPVHRTFQKLSAKYGPVISLRLGSRLVVVISSSSAVEECFTKNDVVLANRPRSLLGKHVGYNHTTMVASPYGDHWRNLRRIGAIEIFSTSRLNKFGGIRRDEVERLLRKLSRNSLHGFSKVHLQSATSELTFNISMRMAAGKRYFGDDVTDEDEARQSRELIKQIVAVGGVSNLGDFIPMLNWILNGYERKVSRLAKRMDAFLQGLIDEHRSNKEEGRNTLIDHLLSLQESEPAYYGDPLIKGFILVLIIAGTDTSAVTIEWALAHLLNNPEVLKKAREELDTQIGQERLIEESDVPKLPYLQRIIFETLRLNPAAPMLLPHLTSDDCTISGYEIPQNTIVLVNAWAIHRDPNQWEEPTQFKPERHQKSEGDQVHKLVPFGVGRRACPGSGMAQRVVGLALGALIQCYEWERIDKEEVDMTELVRGVIMPKAVPLEAMCKARRIIHNLF | 494 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 47497584 | 47501451 | + | Lag0013105.1 | Lac1g2613 | 596184 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g2613 | 494 | FunFam | Cytochrome P450 family protein | 20 | 490 | - | - | |
| Lac1g2613 | 494 | Pfam | Cytochrome P450 | 29 | 475 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | CDD | CYP81 | 60 | 480 | - | - | |
| Lac1g2613 | 494 | SUPERFAMILY | Cytochrome P450 | 29 | 487 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | Gene3D | Cytochrome P450 | 19 | 488 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | PRINTS | P450 superfamily signature | 296 | 313 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | PRINTS | P450 superfamily signature | 349 | 360 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | PRINTS | P450 superfamily signature | 432 | 443 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | PRINTS | P450 superfamily signature | 423 | 432 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | PRINTS | E-class P450 group I signature | 175 | 193 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | PRINTS | E-class P450 group I signature | 56 | 75 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | PRINTS | E-class P450 group I signature | 305 | 331 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | PRINTS | E-class P450 group I signature | 80 | 101 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | PRINTS | E-class P450 group I signature | 285 | 302 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | PRINTS | E-class P450 group I signature | 422 | 432 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | PRINTS | E-class P450 group I signature | 389 | 413 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | PRINTS | E-class P450 group I signature | 432 | 455 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | PRINTS | E-class P450 group I signature | 348 | 366 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g2613 | 494 | PANTHER | CYTOCHROME P450 82C3-RELATED | 14 | 487 | IPR050651 | - | |
| Lac1g2613 | 494 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 425 | 434 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g2613 | Lac-Chr1:47497584 | Lac9g1247 | Lac-Chr9:28876482 | 7.50E-158 | dispersed | |
| Lac1g2613 | Lac-Chr1:47497584 | Lac1g2615 | Lac-Chr1:47508697 | 3.80E-210 | proximal | |
| Lac13g2324 | Lac-Chr13:36850104 | Lac1g2613 | Lac-Chr1:47497584 | 2.00E-17 | transposed | |
| Lac5g1866 | Lac-Chr5:36920308 | Lac1g2613 | Lac-Chr1:47497584 | 1.60E-27 | transposed | |
| Lac9g1831 | Lac-Chr9:38097327 | Lac1g2613 | Lac-Chr1:47497584 | 1.50E-72 | transposed | |
| Lac1g2613 | Lac-Chr1:47497584 | Lac2g0364 | Lac-Chr2:2737472 | 6.80E-143 | wgd | |
| Lac1g2613 | Lac-Chr1:47497584 | Lac6g0264 | Lac-Chr6:2132886 | 8.90E-127 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac1g2613 | K13260 | - | csv:101211829 | 791.956 |