Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2646 ATGCAATTCAGCGAGACCCCCCCACGGTTGCATCAAACGCAAACCACGACGCCTAGGATTTCTTCTTCTCCTTCTCCTTCTTCTTCGTTTCCAGAGATGTCTATGAATAACAGTAATAATAAAAACTACCAGATTGCAACGACTAGGCGGCCATGGCCTGGATTATTCCCTTGTTCCTCCAAGGCTCTTGGCAGTTGCTTCGGCGACGCCAATTGCATGGAACAGTTGTTGGTTCACTGTGCCAACGCCATCGAATCCAACGACGCCACTCTCTCCCAACAAATCCTTTGGGTCCTCAACAACATTGCCCCTCCCGATGGCGACTCCAACCAACGCCTCACTTCCGCCTTCCTACGCGCTCTCGTCTCACGCGCCGCCAACACCGGCAGCTGCAAGATCCTCGCCGCAATCACCACCACCACCACCACCGCCGCCTCCCTCACCACCCACACCTTCTCCCTCATGGACCTCGCCGCGTTCGTCGACTTGACCCCCTGGCACCGCTTCGGCTTCACCGCCGCCAATGCCGCCATCCTCGACGCCGTCGACGGCTACTCCGCCATCCACGTCGTCGATTTCAGCCTGATGCATTGCATGCAAATCCCCACTCTCATCGACGCCATTGCCACTCGCTTCGAGGTCCCCCCTCTACTGAAACTCACCACCGTCTCCGCCGCAGTAAAAGACGCGCCGCCCATGCTGGAGCTGTCGTACGACGAATTGGGTGCGAAATTGGTGAACTTCGCCAGGTCTAAAAACGTGAGTATGGAATTTAGAGTGGTCCCCTCTTGCTACACAGACGGTTTCGCGAATTTAATCGAACAAATCCGAGTGCAACACTTAATTTACGGACCCGAAAACAACGAAGCGCTGGTTTTGAACTGCCACATGATGCTCCACTGCATCCCCGACGAAACGCTAAACCCAAACCCTTCCCCCAATTTCGACATGTCGTCTTCCATTCGATCCATGTTTCTCAAGGCAATCCGTACCTTAGACCCAACCATCGTCATCCTCGTCGACGAAGACGCCGATTTCACCTCCACGAAATTGGTTACCCGATTGAGATCCGCCTTTAATTACCTCTGGATTCCGTACGACTCCATGGATTCGTTTCTTCCGAGGAGTAGCAAGCAGAGGGAGTGGTACGAGGCCGACATTTGCTGGAAGATTGAGAATGTCATTGCTCACGAAGGGATTCAGAGAGTCGAACGGTTGGAGCCCAAGGGGAGGTGGGTTCAGCGGATGGTTAACTCCAAATTCCGAGGGGTTCCGTTCGGAGACGACGCCGTTTCGGAGGTGAAGACGATGCTGGACGAGCATGCAGCGGGATGGGGGTTGAAGAAGGAAGACGACCACCTCCTCCTCACGTGGAAAGGCCACGACGTCGTTTTCGCCACCGCCTGGGTACCTTGCTAA 1419 54.83 MQFSETPPRLHQTQTTTPRISSSPSPSSSFPEMSMNNSNNKNYQIATTRRPWPGLFPCSSKALGSCFGDANCMEQLLVHCANAIESNDATLSQQILWVLNNIAPPDGDSNQRLTSAFLRALVSRAANTGSCKILAAITTTTTTAASLTTHTFSLMDLAAFVDLTPWHRFGFTAANAAILDAVDGYSAIHVVDFSLMHCMQIPTLIDAIATRFEVPPLLKLTTVSAAVKDAPPMLELSYDELGAKLVNFARSKNVSMEFRVVPSCYTDGFANLIEQIRVQHLIYGPENNEALVLNCHMMLHCIPDETLNPNPSPNFDMSSSIRSMFLKAIRTLDPTIVILVDEDADFTSTKLVTRLRSAFNYLWIPYDSMDSFLPRSSKQREWYEADICWKIENVIAHEGIQRVERLEPKGRWVQRMVNSKFRGVPFGDDAVSEVKTMLDEHAAGWGLKKEDDHLLLTWKGHDVVFATAWVPC 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47779612 47781030 - Lag0013138.1 Lac1g2646 596217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2646 472 MobiDBLite consensus disorder prediction 1 39 - -
Lac1g2646 472 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 469 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac1g2646 472 ProSiteProfiles GRAS family profile. 64 470 IPR005202 -
Lac1g2646 472 Pfam GRAS domain family 73 469 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0648 Lac-Chr12:6787042 Lac1g2646 Lac-Chr1:47779612 6.90E-95 dispersed
Lac1g2646 Lac-Chr1:47779612 Lac1g2662 Lac-Chr1:47901921 7.60E-43 dispersed
Lac1g2646 Lac-Chr1:47779612 Lac3g0856 Lac-Chr3:6861724 4.90E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23311 PF03514 GRAS 9.60E-92 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2646 - - - 0.0