Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2647 | ATGAGTTGCAACGGTTGCCGCGTTCTCCGAAAGGGCTGCAGCGAATCCTGTATTCTTCGCCCTTGCTTGCAGTGGATTGACACCTCCGAAGCCCAAGGCCACGCCACTGTCTTCGTCGCCAAGTTCTTCGGCCGCGCTGGTCTCATGTCCTTCATCTCCGCCGTCCCTCAATCTCAGAGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCCTGCGGACGCACCGTCAATCCGGTCAACGGCGCCGTCGGCCTTCTCTGGACTGGCAACTGGCACATCTGTCAGGCGGCGGTCGAGACCGTGTTGCGAGGCGGCACGTTGCGGCCCATGAACGAATTCCTCGCCGCTGGATCTCCCAATCTGGCCTCCGACGAGACCTCCGAGGCTGAAGTCGCCTGTACTGACATGTGGAAGCTTCGAGATTCTTATCCCAATTCCCGATTCTCCAACTCCCGATCCCGGCTCTCCCCGAAACGCAAGCGATCCGAGGAATCCACCAAGAACCAACTGAACGACCTGGATCTCCGCTTGACGCCGAATTTTCCGGCGAAATCAACCCGGCGGGCGGCTACCCCGTCCATGAATTCCGAGGAATCCGAGACCACCACGTGCTTCGAAAGCGGCCTGGGAGATCATCATCATCATCATCTGCAGCAGCAGCAGCAGCACTACTATCTAGAAGAAGCGGCCGGCGAACGGAAGCTTCTGAATTTGTTCGTGTGA | 723 | 57.68 | MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPQSQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHICQAAVETVLRGGTLRPMNEFLAAGSPNLASDETSEAEVACTDMWKLRDSYPNSRFSNSRSRLSPKRKRSEESTKNQLNDLDLRLTPNFPAKSTRRAATPSMNSEESETTTCFESGLGDHHHHHLQQQQQHYYLEEAAGERKLLNLFV | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 47799439 | 47800248 | - | Lag0013139.1 | Lac1g2647 | 596218 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2647 | 240 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - | |
Lac1g2647 | 240 | MobiDBLite | consensus disorder prediction | 146 | 216 | - | - | |
Lac1g2647 | 240 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 100 | IPR004883 | - | |
Lac1g2647 | 240 | MobiDBLite | consensus disorder prediction | 184 | 206 | - | - | |
Lac1g2647 | 240 | MobiDBLite | consensus disorder prediction | 156 | 170 | - | - | |
Lac1g2647 | 240 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 208 | - | GO:0010468(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0499 | Lac-Chr13:3647499 | Lac1g2647 | Lac-Chr1:47799439 | 2.00E-38 | dispersed | |
Lac1g2647 | Lac-Chr1:47799439 | Lac3g0479 | Lac-Chr3:3652801 | 2.30E-40 | dispersed | |
Lac1g2647 | Lac-Chr1:47799439 | Lac2g0382 | Lac-Chr2:2820811 | 5.10E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23312 | PF03195 | LOB | 2.00E-25 | No_clan | Lac | TF |
Pathway information
