Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2647 ATGAGTTGCAACGGTTGCCGCGTTCTCCGAAAGGGCTGCAGCGAATCCTGTATTCTTCGCCCTTGCTTGCAGTGGATTGACACCTCCGAAGCCCAAGGCCACGCCACTGTCTTCGTCGCCAAGTTCTTCGGCCGCGCTGGTCTCATGTCCTTCATCTCCGCCGTCCCTCAATCTCAGAGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCCTGCGGACGCACCGTCAATCCGGTCAACGGCGCCGTCGGCCTTCTCTGGACTGGCAACTGGCACATCTGTCAGGCGGCGGTCGAGACCGTGTTGCGAGGCGGCACGTTGCGGCCCATGAACGAATTCCTCGCCGCTGGATCTCCCAATCTGGCCTCCGACGAGACCTCCGAGGCTGAAGTCGCCTGTACTGACATGTGGAAGCTTCGAGATTCTTATCCCAATTCCCGATTCTCCAACTCCCGATCCCGGCTCTCCCCGAAACGCAAGCGATCCGAGGAATCCACCAAGAACCAACTGAACGACCTGGATCTCCGCTTGACGCCGAATTTTCCGGCGAAATCAACCCGGCGGGCGGCTACCCCGTCCATGAATTCCGAGGAATCCGAGACCACCACGTGCTTCGAAAGCGGCCTGGGAGATCATCATCATCATCATCTGCAGCAGCAGCAGCAGCACTACTATCTAGAAGAAGCGGCCGGCGAACGGAAGCTTCTGAATTTGTTCGTGTGA 723 57.68 MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPQSQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHICQAAVETVLRGGTLRPMNEFLAAGSPNLASDETSEAEVACTDMWKLRDSYPNSRFSNSRSRLSPKRKRSEESTKNQLNDLDLRLTPNFPAKSTRRAATPSMNSEESETTTCFESGLGDHHHHHLQQQQQHYYLEEAAGERKLLNLFV 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47799439 47800248 - Lag0013139.1 Lac1g2647 596218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2647 240 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Lac1g2647 240 MobiDBLite consensus disorder prediction 146 216 - -
Lac1g2647 240 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Lac1g2647 240 MobiDBLite consensus disorder prediction 184 206 - -
Lac1g2647 240 MobiDBLite consensus disorder prediction 156 170 - -
Lac1g2647 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 208 - GO:0010468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0499 Lac-Chr13:3647499 Lac1g2647 Lac-Chr1:47799439 2.00E-38 dispersed
Lac1g2647 Lac-Chr1:47799439 Lac3g0479 Lac-Chr3:3652801 2.30E-40 dispersed
Lac1g2647 Lac-Chr1:47799439 Lac2g0382 Lac-Chr2:2820811 5.10E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23312 PF03195 LOB 2.00E-25 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2647 - - - 0.0