Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2662 ATGGATACCTTGTTTCGGCTTGTCAATCTCCAATCTGATCAATCTTACAACTCCAGCAGAACCAATTCTAGCAGCTCTAGATCTTCCAGACAAAACCAATATCATTACCATCAAAACGAAGACGAAGAATGCTACAACCTTCTCATGGATGAGGAAGATTTCTCTTCGTCTAGTAATTCTAGACAATACTATAATCCGTACCATCCCCACCCACCCTCCACCGCCACCGCCTCCACCACCCCCACCGTCACCACCCCAACGCCGATCGACCAATTTTCCTTCGTCTCCCCCTCTCCGGACTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTTGAAACCGCCAGGGCTATTTCTGACAGGAACAGCGCTCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGAGATACGGATCAAAAGCTCGCAGCCTACTTCCTGCAGGCCTTGTTTAGCCGCATGACAGATTCCGGCGACCGTAATTATCGCGCTTTGGCCTCTGCCTCAGAGAAAACATGCTCGTTCGAATCAACTAGGAAAATGATGCTCAAGTTTCAGGAGGTTAGCCCCTGGACCACTTTTGGCCATGTTTCTTGCAATGGCGCATTGATTGAAGCCTTAGAAGGCGAATCGAAGCTACACATAATCGATATCAGCAACACGTATTGCACTCAGTGGCCGACTTTGCTAGAAGCCCTCGCGACTCGTACCGACGACACGCCGCACCTCCGCCTCACGACGGTCGTCACCACCAAGCCCGGTGGTGGCACCGGCGTAGCCGCATCTCAAAAAGTAATGAAGGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCAATACGCTGTACCATTCCGGTGACCTTTCGGAATTGGACTTCGCCAAATTAGACATCAAAGAAGACGAGGCACTCGCCATCAACTGCGTCGGAGCCTTACGTTCCGTGGCGGCGATTAATAACCGCCGAGATTTCTTGATTTCGTCTTTCCGCAGTTTGCGGCCGCGGATCATCACGGTGATAGAGGAGGAAGCCGATCTCGACGTAGGCGTCGATGGGATTGAATTTCTGAGAGGGTTCCAAGAATGTTTGCGTTGGTTTAGGGTTTATTTTGAGACATTGGACGAGAGTTTCACGAGGACGAGCAACGAGCGGTTGATGCTTGAGAGAGCGGCCGGTAGGGCAATCGTGGACCTGGTGGCATGCTCGGCGGCGGAGTCGGTGGAGAGGCGGGAATCGGCGGCGAGGTGGGCACAGCGGCTGCATGGAAGCGGATTCGGTCCGGTGACGTTCAGCGACGAAGTATGCGACGACGTGAGGGCGCTGTTGAGAAGGTACAAGGAAGGATGGGCAATGACACAGAGCTCCGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1479 52.6 MDTLFRLVNLQSDQSYNSSRTNSSSSRSSRQNQYHYHQNEDEECYNLLMDEEDFSSSSNSRQYYNPYHPHPPSTATASTTPTVTTPTPIDQFSFVSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPGGGTGVAASQKVMKEIGTRMEKFARLMGVPFKFNTLYHSGDLSELDFAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFLRGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47901921 47903399 - Lag0013154.1 Lac1g2662 596233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2662 492 ProSiteProfiles GRAS family profile. 101 491 IPR005202 -
Lac1g2662 492 MobiDBLite consensus disorder prediction 14 33 - -
Lac1g2662 492 MobiDBLite consensus disorder prediction 56 84 - -
Lac1g2662 492 MobiDBLite consensus disorder prediction 14 36 - -
Lac1g2662 492 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 62 490 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Lac1g2662 492 Pfam GRAS domain family 113 491 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2662 K27743 - - csv:101204711 856.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2646 Lac-Chr1:47779612 Lac1g2662 Lac-Chr1:47901921 7.60E-43 dispersed
Lac1g2662 Lac-Chr1:47901921 Lac9g1067 Lac-Chr9:25222187 2.00E-163 dispersed
Lac1g2662 Lac-Chr1:47901921 Lac3g0856 Lac-Chr3:6861724 3.70E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac9g2460 . 2 251 GRAS Transcription Factor Family AT2G29060 58.6 6.6e-85 312.8
Lac10g3111 . 77 758 GRAS Transcription Factor Family AT2G37650 54.1 2.8e-198 689.5
Lac9g2460 . 12 251 GRAS Transcription Factor Family AT2G37650 56.7 1.2e-81 302.0
Lac7g2743 . 245 699 GRAS Transcription Factor Family AT3G46600 50.8 9.9e-127 451.4
Lac9g2460 . 2 252 GRAS Transcription Factor Family AT3G46600 51.4 3.2e-77 287.0
Lac1g2646 . 48 471 GRAS Transcription Factor Family AT3G49950 60.0 1.1e-135 480.7
Lac9g2460 . 10 252 GRAS Transcription Factor Family AT1G07530 60.5 1.5e-88 325.1
Lac5g0412 . 418 781 GRAS Transcription Factor Family AT3G60630 50.8 4.5e-91 333.2
Lac5g2049 . 82 532 GRAS Transcription Factor Family AT4G36710 53.2 3.1e-124 443.0
Lac5g2324 . 44 453 GRAS Transcription Factor Family AT5G41920 67.3 1.6e-150 530.0
Lac1g1733 . 457 833 GRAS Transcription Factor Family AT5G41920 56.6 4.9e-115 412.1
Lac5g2043 . 1 614 GRAS Transcription Factor Family AT5G66770 58.1 3.4e-178 622.5
Lac1g2904 . 1 610 GRAS Transcription Factor Family AT5G66770 56.9 2.9e-177 619.4
Lac9g1970 . 57 527 GRAS Transcription Factor Family AT1G50600 59.5 1.3e-155 547.4
Lac5g0961 . 43 520 GRAS Transcription Factor Family AT1G50600 56.2 2.0e-148 523.5
Lac1g3147 . 111 549 GRAS Transcription Factor Family AT1G50600 56.6 1.3e-139 494.2
Lac2g1349 . 224 594 GRAS Transcription Factor Family AT1G50600 62.3 2.5e-135 479.9
Lac2g1740 . 195 576 GRAS Transcription Factor Family AT1G50600 51.0 4.0e-109 392.9
Lac8g1624 . 44 579 GRAS Transcription Factor Family AT1G14920 68.8 1.5e-209 726.5
Lac8g1949 . 1 525 GRAS Transcription Factor Family AT1G14920 61.7 6.8e-173 604.7
Lac11g0204 . 1 545 GRAS Transcription Factor Family AT1G14920 54.2 4.7e-158 555.4
Lac5g0623 . 46 414 GRAS Transcription Factor Family AT1G55580 51.2 2.3e-105 380.2
Lac8g1624 . 1 577 GRAS Transcription Factor Family AT1G66350 57.6 2.4e-175 612.8
Lac11g0204 . 1 542 GRAS Transcription Factor Family AT1G66350 58.2 1.1e-167 587.4
Lac8g1949 . 1 526 GRAS Transcription Factor Family AT1G66350 60.3 1.4e-167 587.0
Lac9g2460 . 1 252 GRAS Transcription Factor Family AT1G07520 60.2 6.7e-88 322.4
Lac9g1970 . 19 527 GRAS Transcription Factor Family AT5G48150 64.7 3.3e-182 635.6
Lac5g0961 . 17 520 GRAS Transcription Factor Family AT5G48150 57.1 3.6e-160 562.4
Lac1g3147 . 16 549 GRAS Transcription Factor Family AT5G48150 52.4 2.6e-150 529.6
Lac2g1349 . 114 594 GRAS Transcription Factor Family AT5G48150 51.5 4.2e-137 485.7
Lac2g1740 . 184 576 GRAS Transcription Factor Family AT5G48150 54.1 1.2e-120 431.0
Lac8g1624 . 46 576 GRAS Transcription Factor Family AT2G01570 69.9 4.6e-215 745.0
Lac8g1949 . 1 524 GRAS Transcription Factor Family AT2G01570 61.5 3.0e-174 609.4
Lac11g0204 . 27 543 GRAS Transcription Factor Family AT2G01570 57.7 2.7e-162 569.7
Lac8g1624 . 1 577 GRAS Transcription Factor Family AT1G66350 57.6 2.4e-175 612.8
Lac11g0204 . 1 542 GRAS Transcription Factor Family AT1G66350 58.2 1.1e-167 587.4
Lac8g1949 . 1 526 GRAS Transcription Factor Family AT1G66350 60.3 1.4e-167 587.0
Lac8g1624 . 46 576 GRAS Transcription Factor Family AT3G03450 60.6 5.0e-171 598.6
Lac8g1949 . 1 522 GRAS Transcription Factor Family AT3G03450 60.5 7.0e-165 578.2
Lac11g0204 . 27 543 GRAS Transcription Factor Family AT3G03450 58.4 4.1e-157 552.4
Lac8g1624 . 42 576 GRAS Transcription Factor Family AT5G17490 57.2 8.7e-157 551.2
Lac8g1949 . 1 525 GRAS Transcription Factor Family AT5G17490 56.1 1.5e-148 523.9
Lac11g0204 . 24 544 GRAS Transcription Factor Family AT5G17490 55.2 4.5e-145 512.3
Lac2g1740 . 1 576 GRAS Transcription Factor Family AT1G21450 57.9 8.1e-175 611.3
Lac7g2743 . 307 699 GRAS Transcription Factor Family AT5G59450 54.7 2.2e-127 453.8
Lac1g3147 . 1 549 GRAS Transcription Factor Family AT4G17230 57.8 3.0e-173 605.9
Lac9g1970 . 1 527 GRAS Transcription Factor Family AT4G17230 50.6 4.4e-140 495.7
Lac2g1349 . 221 594 GRAS Transcription Factor Family AT4G17230 52.9 1.0e-112 404.8
Lac9g1970 . 134 527 GRAS Transcription Factor Family AT2G04890 65.8 2.5e-151 532.7
Lac5g0961 . 163 520 GRAS Transcription Factor Family AT2G04890 60.9 3.5e-132 469.2
Lac2g1349 . 224 594 GRAS Transcription Factor Family AT2G04890 60.4 6.1e-129 458.4
Lac1g3147 . 169 549 GRAS Transcription Factor Family AT2G04890 58.3 3.8e-123 439.1
Lac3g1400 . 1 471 GRAS Transcription Factor Family AT1G50420 66.0 1.9e-174 609.8
Lac13g0736 . 94 555 GRAS Transcription Factor Family AT1G50420 60.9 1.4e-156 550.4
Lac5g0412 . 418 781 GRAS Transcription Factor Family AT4G00150 55.4 9.2e-104 375.2
Lac1g2904 . 1 610 GRAS Transcription Factor Family AT3G50650 50.7 4.7e-153 538.9
Lac5g2043 . 1 614 GRAS Transcription Factor Family AT3G50650 53.1 5.7e-151 531.9
Lac1g1733 . 179 831 GRAS Transcription Factor Family AT3G54220 60.8 2.4e-204 709.5
Lac5g2324 . 84 449 GRAS Transcription Factor Family AT3G54220 64.5 1.8e-135 480.7
Lac1g2662 . 101 492 GRAS Transcription Factor Family AT4G37650 68.3 2.3e-157 553.1
Lac9g1067 . 143 529 GRAS Transcription Factor Family AT4G37650 61.3 6.0e-137 485.3
Lac4g1787 . 61 444 GRAS Transcription Factor Family AT4G37650 50.9 4.3e-111 399.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002542 0 2 2 2 2 2 3 2 2 2 2 2 3 2 2 2 2 2 3 2 2 1 2 2 2 2 2 2 3 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23315 PF03514 GRAS 1.30E-104 CL0063 Lac TF