Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2662 ATGGATACCTTGTTTCGGCTTGTCAATCTCCAATCTGATCAATCTTACAACTCCAGCAGAACCAATTCTAGCAGCTCTAGATCTTCCAGACAAAACCAATATCATTACCATCAAAACGAAGACGAAGAATGCTACAACCTTCTCATGGATGAGGAAGATTTCTCTTCGTCTAGTAATTCTAGACAATACTATAATCCGTACCATCCCCACCCACCCTCCACCGCCACCGCCTCCACCACCCCCACCGTCACCACCCCAACGCCGATCGACCAATTTTCCTTCGTCTCCCCCTCTCCGGACTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTTGAAACCGCCAGGGCTATTTCTGACAGGAACAGCGCTCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGAGATACGGATCAAAAGCTCGCAGCCTACTTCCTGCAGGCCTTGTTTAGCCGCATGACAGATTCCGGCGACCGTAATTATCGCGCTTTGGCCTCTGCCTCAGAGAAAACATGCTCGTTCGAATCAACTAGGAAAATGATGCTCAAGTTTCAGGAGGTTAGCCCCTGGACCACTTTTGGCCATGTTTCTTGCAATGGCGCATTGATTGAAGCCTTAGAAGGCGAATCGAAGCTACACATAATCGATATCAGCAACACGTATTGCACTCAGTGGCCGACTTTGCTAGAAGCCCTCGCGACTCGTACCGACGACACGCCGCACCTCCGCCTCACGACGGTCGTCACCACCAAGCCCGGTGGTGGCACCGGCGTAGCCGCATCTCAAAAAGTAATGAAGGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCAATACGCTGTACCATTCCGGTGACCTTTCGGAATTGGACTTCGCCAAATTAGACATCAAAGAAGACGAGGCACTCGCCATCAACTGCGTCGGAGCCTTACGTTCCGTGGCGGCGATTAATAACCGCCGAGATTTCTTGATTTCGTCTTTCCGCAGTTTGCGGCCGCGGATCATCACGGTGATAGAGGAGGAAGCCGATCTCGACGTAGGCGTCGATGGGATTGAATTTCTGAGAGGGTTCCAAGAATGTTTGCGTTGGTTTAGGGTTTATTTTGAGACATTGGACGAGAGTTTCACGAGGACGAGCAACGAGCGGTTGATGCTTGAGAGAGCGGCCGGTAGGGCAATCGTGGACCTGGTGGCATGCTCGGCGGCGGAGTCGGTGGAGAGGCGGGAATCGGCGGCGAGGTGGGCACAGCGGCTGCATGGAAGCGGATTCGGTCCGGTGACGTTCAGCGACGAAGTATGCGACGACGTGAGGGCGCTGTTGAGAAGGTACAAGGAAGGATGGGCAATGACACAGAGCTCCGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1479 52.6 MDTLFRLVNLQSDQSYNSSRTNSSSSRSSRQNQYHYHQNEDEECYNLLMDEEDFSSSSNSRQYYNPYHPHPPSTATASTTPTVTTPTPIDQFSFVSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPGGGTGVAASQKVMKEIGTRMEKFARLMGVPFKFNTLYHSGDLSELDFAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFLRGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47901921 47903399 - Lag0013154.1 Lac1g2662 596233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2662 492 ProSiteProfiles GRAS family profile. 101 491 IPR005202 -
Lac1g2662 492 MobiDBLite consensus disorder prediction 14 33 - -
Lac1g2662 492 MobiDBLite consensus disorder prediction 56 84 - -
Lac1g2662 492 MobiDBLite consensus disorder prediction 14 36 - -
Lac1g2662 492 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 62 490 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Lac1g2662 492 Pfam GRAS domain family 113 491 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2646 Lac-Chr1:47779612 Lac1g2662 Lac-Chr1:47901921 7.60E-43 dispersed
Lac1g2662 Lac-Chr1:47901921 Lac9g1067 Lac-Chr9:25222187 2.00E-163 dispersed
Lac1g2662 Lac-Chr1:47901921 Lac3g0856 Lac-Chr3:6861724 3.70E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23315 PF03514 GRAS 1.30E-104 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2662 K27743 - csv:101204711 856.284