Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g2663 | ATGGGGAAGAAACAGCACAGCAAAGACCGTTTGTTTATTACGAAAACTGAATGGGCCACCGAATGGGGTGGCGCCAAATCCAAGGACTCTCAAACCCCTTTCAAACGGCTTCCTTTCTATTGCTGCGCGCTTACATTTACGCCCTTTGAGGACCCTGTATGTACTGCCGATGGCAGCGTCTTCGAGATAATGAATATCATCCCTTATATCCGAAAGTACGGTAAAAATCCTGTTACTGGAGCTCCCCTGAAGCAGGAGGATCTAATTCCACTGACTTTCCACAAGAATTCTGAAGGTGAGTTCCAGTGCCCTGTTCTAAACAAAGTTTTTACCGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTTTGTTACGAGGCAATTAAAGAATTAAATATCAAGACAAAAAACTGGAAGGAACTTCTAACTGATGAACCATTTAGTAGGGAAGATATTATAACCATTCAGAACCCTACTGCGCTTGATAGTAAGGTTCTCCTGGATTTTGATCATGTGAAAAATAGCCTGAAAATTGATGATGAAGAACTTCAGAAAATGAAATCAGATCCAACATATAACATAAATGTATTGGGGGACATCAAGCAGATGCTGAAGGAACTTGGAACCGAAAAAGGAAGGCAAACTGCCCTTCATGGGGGAGGTGGTGGCAAGGCACAGAAAGAAAGGGCAGCTGCACTTGCTGCAATTTTAGATGCTAGGTCACGCATTAAAGAGGATTCCAAGGAAAATGTAAAAGGAGAGGAGAAACCTACTCAGGCATTTAGTATTGTGGATGCTGCATCTGCTTCAGTACATGGAAGAAGTGCAGCTGCTGCGAAAGCTGCACCAAGTGAAAAAACTGCAGCTCGAATTGCGATGCACATGGCGGGTGAGAGGGCACCTGTGAATGCTAAGATGGTAAAGAGTCGTTATACTACTGGTGCTGCATCTCGATCCTTCACATCTACAGCTTATGATCCTGTTACAAAGAATGAACATGAATATATCAAGGTTGAGAAAAATCCAAAGAAGAAAGGATATGTACAGTTGCATACAACACATGGAGATTTGAATATTGAGCTGCATTGTGATATTACTCCAAGGGCATGCGAGAATTTCATCACACTGTGTGAAAATGGCTACTACAATGGAGTTGTTTTTCATAGAAATATTAGGAATTTTATGATTCAAGGTGGCGATCCAACTGGTACTGGGAGAGGGGGTGAATCTATATGGGGAAAGCCCTTCAACGATGAACTCAACTCCAAGTTGCTTCATTCTGGAAGGGGTGTTGTCAGTATGGCAAATAGTGGTCCCCACACTAATGGTTCCCAGTTCTTTATTTTGTACAAATCTGCCAATCATTTAAACTTCAAGCATACTGTATTTGGCGGTGTTGTTGGAGGTTTGACTACTTTGGCAGCAATGGAAAAGGTTCCTATTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATAACAAGTGTTACAGTTTTTGTCAATCCATACTCAGAACCCGATGAAGAAGAGGAAGAAAAGCAAAAAGACGAGAAGAATGTTGAAGATGAAGAAAATGATAAGGTTGGATCATGGTATAGTAACCCAGGCACCGGGGTAGCCGAAAATGGAGCTGCTGGTGGTGGTGTAGGGAAATATTTGAAAGCAAGGAATGCCCAATCCAAATCCTCTGCTGTCAATGCTAGTCTAAGAGAACCTACCTCGACAAAGAAAAGGACAGCCGCAGGAGAATTCAAAGACTTCTCTTCGTGGTAA | 1782 | 42.37 | MGKKQHSKDRLFITKTEWATEWGGAKSKDSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGAPLKQEDLIPLTFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAIKELNIKTKNWKELLTDEPFSREDIITIQNPTALDSKVLLDFDHVKNSLKIDDEELQKMKSDPTYNINVLGDIKQMLKELGTEKGRQTALHGGGGGKAQKERAAALAAILDARSRIKEDSKENVKGEEKPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTAYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCENGYYNGVVFHRNIRNFMIQGGDPTGTGRGGESIWGKPFNDELNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAMEKVPIDDNDRPLEEIKITSVTVFVNPYSEPDEEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAENGAAGGGVGKYLKARNAQSKSSAVNASLREPTSTKKRTAAGEFKDFSSW | 593 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 47909174 | 47912498 | - | Lag0013155.1 | Lac1g2663 | 596234 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g2663 | 593 | FunFam | Peptidyl-prolyl cis-trans isomerase cyp65 | 331 | 515 | - | - | |
| Lac1g2663 | 593 | MobiDBLite | consensus disorder prediction | 504 | 593 | - | - | |
| Lac1g2663 | 593 | Pfam | U-box domain | 39 | 91 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Lac1g2663 | 593 | CDD | cyclophilin_RING | 350 | 507 | - | - | |
| Lac1g2663 | 593 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 390 | 402 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Lac1g2663 | 593 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 433 | 448 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Lac1g2663 | 593 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 364 | 379 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Lac1g2663 | 593 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 448 | 460 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Lac1g2663 | 593 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 461 | 476 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Lac1g2663 | 593 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 385 | 402 | IPR020892 | GO:0003755(InterPro)|GO:0006457(InterPro) | |
| Lac1g2663 | 593 | MobiDBLite | consensus disorder prediction | 559 | 578 | - | - | |
| Lac1g2663 | 593 | ProSiteProfiles | U-box domain profile. | 35 | 108 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Lac1g2663 | 593 | SUPERFAMILY | Cyclophilin-like | 350 | 518 | IPR029000 | - | |
| Lac1g2663 | 593 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 350 | 501 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Lac1g2663 | 593 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 354 | 501 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Lac1g2663 | 593 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 339 | 510 | IPR044666 | GO:0000209(PANTHER)|GO:0061630(PANTHER)|GO:0071013(PANTHER) | |
| Lac1g2663 | 593 | SUPERFAMILY | RING/U-box | 37 | 104 | - | - | |
| Lac1g2663 | 593 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 96 | IPR013083 | - | |
| Lac1g2663 | 593 | Gene3D | - | 330 | 515 | IPR029000 | - | |
| Lac1g2663 | 593 | SMART | Ubox_2 | 39 | 101 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Lac1g2663 | 593 | FunFam | Peptidyl-prolyl cis-trans isomerase 2 | 41 | 96 | - | - | |
| Lac1g2663 | 593 | CDD | RING-Ubox_PPIL2 | 38 | 110 | IPR026951 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g2663 | Lac-Chr1:47909174 | Lac7g0310 | Lac-Chr7:2379499 | 1.20E-50 | dispersed | |
| Lac1g2663 | Lac-Chr1:47909174 | Lac12g0893 | Lac-Chr12:9353451 | 4.50E-32 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac1g2663 | K10598 | - | csv:101204462 | 1047.34 |