Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2672 ATGCTTCGAAAGATGGAGAAGAGATTTACGCTGTTGTTTTCTCCAGGACTTGTAGAAATTACAGATAATTCAAGGTATGCAATGGTATTTAGGGCTGATGACTTTTTGCAGAAACCAGAAGTTAATCTTGGTGGATGTCCCAGAGGTAGCCATGTCAGGTGGAATACTCTGGTGCCGAACAAAGAAGTTGTGAGCCTTAATAGTCATGGTGAAAGTCTGTGGTTAAGCTCTGGGCAGGCGGGTACACTCCGGAGAAGAGGGGTCGTCCTGGATAAGAGCAAGAACTCTCGTTGGAATGAATTGTGCGGTGGAAATCGAAAGTACGCTACAAATACTTCAAAAATTGTTGCAGAGTCGGGGGGGCTTTTGCAAATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACAATACTTACAGATCCAGAGTTCAGCTCAATTTTGCATCAGCGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAAGCTAAGCTCGCACTTAAAAAGAATTCTTTGGCCCTAAAACAACATGATAATCCTATGGCTGTAACCACCGTGCTTCAGAACGAAGAGATTGTTGACGCTAAGCCACTTGCAATTTCGAATGGAACAATTCGCACTAATGGGCCAAAAGAACCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACCTAAAGGAGCCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCTCCAAACCTTAAAAAGCTTCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAAATTCAACCTTATCTGGAAGAAGAAATGTTCCATTGTTACTCGAGGACAAGCAGATGGATTCTTCAAAGACCGAGAAGAGTGAAGTCAAAATCATCACTAAGTCCCAGGTTGACTCTGAACTTTCAAAGATGAAGGTAATGACTGCAGAAGAGGCAGCTATTGCTGCTGCACGTGCGGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGACGCAGAAGAAGCCGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCTAGTAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGAATATGGTTGCCTTGTGAGAAAGACAGCTTCTGGGGATCGTTTCATCGGAAGTACTGTCTTTGTGATTCTAAGAGAAATCAATTGCATAAAATTAAGATACGATTTTTCGTCCACCCAACACAATTTGGCAGAAGTTCCTCAACAAAATATGTGGAACAATATGCTTTTCTACAAGTACAGAAACGAACAGTTGTTGATTATTAGCATTTACAGTGGAAGAACAAGTTTGCATTACAACATTTACAAAAGAGTTTTCGCGGCAGAATGTGATTCTACGAACAATTATGGTACAACATGA 1575 42.54 MLRKMEKRFTLLFSPGLVEITDNSRYAMVFRADDFLQKPEVNLGGCPRGSHVRWNTLVPNKEVVSLNSHGESLWLSSGQAGTLRRRGVVLDKSKNSRWNELCGGNRKYATNTSKIVAESGGLLQMGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKQHDNPMAVTTVLQNEEIVDAKPLAISNGTIRTNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSTLSGRRNVPLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAARDAEEAEAEAESAQVFAEAAMKALECRTFPSRSPIQKVLLQEYGCLVRKTASGDRFIGSTVFVILREINCIKLRYDFSSTQHNLAEVPQQNMWNNMLFYKYRNEQLLIISIYSGRTSLHYNIYKRVFAAECDSTNNYGTT 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47956081 47971487 - Lag0013164.1 Lac1g2672 596243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2672 524 Gene3D - 242 318 IPR036388 -
Lac1g2672 524 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 242 310 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac1g2672 524 FunFam Telomere repeat-binding factor 1 126 182 - -
Lac1g2672 524 Coils Coil 363 400 - -
Lac1g2672 524 SMART sant 128 183 IPR001005 -
Lac1g2672 524 CDD SANT_TRF 130 181 - -
Lac1g2672 524 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Lac1g2672 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Lac1g2672 524 FunFam Telomere repeat-binding factor 1 240 320 - -
Lac1g2672 524 SUPERFAMILY Winged helix DNA-binding domain 240 318 IPR036390 -
Lac1g2672 524 SMART h15plus2 240 305 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac1g2672 524 Gene3D - 125 183 - -
Lac1g2672 524 Pfam Myb-like DNA-binding domain 129 179 IPR001005 -
Lac1g2672 524 Pfam linker histone H1 and H5 family 247 304 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac1g2672 524 SUPERFAMILY Homeodomain-like 126 188 IPR009057 -
Lac1g2672 524 PANTHER SINGLE MYB HISTONE 4 125 411 IPR044597 GO:0003691(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2672 K09422 - - csv:101202913 471.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2458 Lac-Chr12:41648611 Lac1g2672 Lac-Chr1:47956081 1.40E-28 dispersed
Lac1g2672 Lac-Chr1:47956081 Lac3g1744 Lac-Chr3:17848055 5.20E-16 dispersed
Lac1g2672 Lac-Chr1:47956081 Lac5g2619 Lac-Chr5:44693250 1.20E-65 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g2619 . 1 322 Single Myb Histone (SMH) Gene Family AT1G49950 58.8 7.7e-73 271.6
Lac1g2672 . 125 370 Single Myb Histone (SMH) Gene Family AT1G49950 54.7 1.5e-63 240.7
Lac1g2672 . 125 370 Single Myb Histone (SMH) Gene Family AT5G67580 53.2 7.7e-65 245.0
Lac1g2672 . 125 370 Single Myb Histone (SMH) Gene Family AT3G49850 52.2 4.8e-59 225.7
Lac12g2458 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 50.7 8.5e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23318 PF00538 Linker_histone 7.50E-11 CL0123 Lac TF