Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2672 ATGCTTCGAAAGATGGAGAAGAGATTTACGCTGTTGTTTTCTCCAGGACTTGTAGAAATTACAGATAATTCAAGGTATGCAATGGTATTTAGGGCTGATGACTTTTTGCAGAAACCAGAAGTTAATCTTGGTGGATGTCCCAGAGGTAGCCATGTCAGGTGGAATACTCTGGTGCCGAACAAAGAAGTTGTGAGCCTTAATAGTCATGGTGAAAGTCTGTGGTTAAGCTCTGGGCAGGCGGGTACACTCCGGAGAAGAGGGGTCGTCCTGGATAAGAGCAAGAACTCTCGTTGGAATGAATTGTGCGGTGGAAATCGAAAGTACGCTACAAATACTTCAAAAATTGTTGCAGAGTCGGGGGGGCTTTTGCAAATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACAATACTTACAGATCCAGAGTTCAGCTCAATTTTGCATCAGCGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAAGCTAAGCTCGCACTTAAAAAGAATTCTTTGGCCCTAAAACAACATGATAATCCTATGGCTGTAACCACCGTGCTTCAGAACGAAGAGATTGTTGACGCTAAGCCACTTGCAATTTCGAATGGAACAATTCGCACTAATGGGCCAAAAGAACCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACCTAAAGGAGCCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCTCCAAACCTTAAAAAGCTTCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAAATTCAACCTTATCTGGAAGAAGAAATGTTCCATTGTTACTCGAGGACAAGCAGATGGATTCTTCAAAGACCGAGAAGAGTGAAGTCAAAATCATCACTAAGTCCCAGGTTGACTCTGAACTTTCAAAGATGAAGGTAATGACTGCAGAAGAGGCAGCTATTGCTGCTGCACGTGCGGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGACGCAGAAGAAGCCGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCTAGTAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGAATATGGTTGCCTTGTGAGAAAGACAGCTTCTGGGGATCGTTTCATCGGAAGTACTGTCTTTGTGATTCTAAGAGAAATCAATTGCATAAAATTAAGATACGATTTTTCGTCCACCCAACACAATTTGGCAGAAGTTCCTCAACAAAATATGTGGAACAATATGCTTTTCTACAAGTACAGAAACGAACAGTTGTTGATTATTAGCATTTACAGTGGAAGAACAAGTTTGCATTACAACATTTACAAAAGAGTTTTCGCGGCAGAATGTGATTCTACGAACAATTATGGTACAACATGA 1575 42.54 MLRKMEKRFTLLFSPGLVEITDNSRYAMVFRADDFLQKPEVNLGGCPRGSHVRWNTLVPNKEVVSLNSHGESLWLSSGQAGTLRRRGVVLDKSKNSRWNELCGGNRKYATNTSKIVAESGGLLQMGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKQHDNPMAVTTVLQNEEIVDAKPLAISNGTIRTNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSTLSGRRNVPLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAARDAEEAEAEAESAQVFAEAAMKALECRTFPSRSPIQKVLLQEYGCLVRKTASGDRFIGSTVFVILREINCIKLRYDFSSTQHNLAEVPQQNMWNNMLFYKYRNEQLLIISIYSGRTSLHYNIYKRVFAAECDSTNNYGTT 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47956081 47971487 - Lag0013164.1 Lac1g2672 596243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2672 524 Gene3D - 242 318 IPR036388 -
Lac1g2672 524 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 242 310 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac1g2672 524 FunFam Telomere repeat-binding factor 1 126 182 - -
Lac1g2672 524 Coils Coil 363 400 - -
Lac1g2672 524 SMART sant 128 183 IPR001005 -
Lac1g2672 524 CDD SANT_TRF 130 181 - -
Lac1g2672 524 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Lac1g2672 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Lac1g2672 524 FunFam Telomere repeat-binding factor 1 240 320 - -
Lac1g2672 524 SUPERFAMILY Winged helix DNA-binding domain 240 318 IPR036390 -
Lac1g2672 524 SMART h15plus2 240 305 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac1g2672 524 Gene3D - 125 183 - -
Lac1g2672 524 Pfam Myb-like DNA-binding domain 129 179 IPR001005 -
Lac1g2672 524 Pfam linker histone H1 and H5 family 247 304 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac1g2672 524 SUPERFAMILY Homeodomain-like 126 188 IPR009057 -
Lac1g2672 524 PANTHER SINGLE MYB HISTONE 4 125 411 IPR044597 GO:0003691(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2458 Lac-Chr12:41648611 Lac1g2672 Lac-Chr1:47956081 1.40E-28 dispersed
Lac1g2672 Lac-Chr1:47956081 Lac3g1744 Lac-Chr3:17848055 5.20E-16 dispersed
Lac1g2672 Lac-Chr1:47956081 Lac5g2619 Lac-Chr5:44693250 1.20E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23318 PF00538 Linker_histone 7.50E-11 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2672 K09422 - csv:101202913 471.47