Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2705 | ATGAATAATGTTAATGGCAACAACTGTAACTGGCTAGGTTTTTCTGTCTCCCCTAACGTTAACATGGAGCTTTCTTCTTCCTCTGCTACTTCTGTCTCCTCTTCAATTCCTGCAAATCTTTTTCACTCCCCATCTCAGCATAACTATGGCATTTGCTATGGTGTTGATGGAGAACATGGTGGCTTTTATTCACCATTGTCTGTCATGCCACTCAAGTCTGATGGCTCAATTTGTTCAATGGAAGCTCTCAGTAGGCAGCATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGCGGTGCAACTATGGGGTCCCATCACTATGAAAGTAATGACAGTGTAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAACCCTTTGCACATTTCTCATCCTTAAGAAGCCGTGAAATGATGCTTCAAGACTCTAAGGTAATCCTACCTGATGGGTGCAATATGCAGCAGCAGCAGCAGCACCCAACAGTGGCGGAGAGTGAGATTTCTGGTATGAAGAATTGGGCTGTTCCAAGGAACTATGCTGTCACTAATAATAGTTCATTCGAGCAGAAAATGGTGAGTTGCATGAGTGAAAATGGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGTGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACGGCCACACAGCATGTCTCACCCGCCATGGCTGACTGTTCTGCCATGGATACAAAGAAAAGAGGCCACGAGAAGCTGGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGACACCTTTGGACAGAGAACCTCTCAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGGAGGTTATGATATGGAAGAAAAGGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAACTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGGAGAAGCAGTGGGTTCTCGAGGGGGGCCTCGATTTACAGAGGCGTGACAAGACATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGCAATAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCGGCCGAGGCCTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCTGTTACTAATTTCGACATTACGAGGTATGACGTGGAGCGGATCATCGCAAGCAATACCCTGCTTAGTGGTGATCTAGCTAAGAGAAAGCAGCAGCCAGAGTTTGATAATGAATCTCTTAGACAAAGCCCTCCAACTCACAACAGCAATTCAGAAGCCATGCCTTTGCCCTCACAGAGTAGTCAAAGTGAATCAGACTGGAAGATGGCTCTTTATCAGTCATCTCAGCAGCTCATTCCAAAACCTCGGTTGTTATCTGCGATAAACGATGATGGATCACAACTAGGAGTCGAAGACTCCACCAAAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACCAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGCCCAGACAAGACGAGCCTTTCAATGGTGTTCGGAATGCCTCAATCGACATCTAAGCCGTTTGCTGCCTCAGCTAGTAATATGAACTCCTGGATTGCATCTGCCCAGCAGTTGAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA | 1875 | 46.19 | MNNVNGNNCNWLGFSVSPNVNMELSSSSATSVSSSIPANLFHSPSQHNYGICYGVDGEHGGFYSPLSVMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDSVAMALSLDSIFCHQNPTHEPNNQPFAHFSSLRSREMMLQDSKVILPDGCNMQQQQQHPTVAESEISGMKNWAVPRNYAVTNNSSFEQKMVSCMSENGGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTATQHVSPAMADCSAMDTKKRGHEKLDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRQSPPTHNSNSEAMPLPSQSSQSESDWKMALYQSSQQLIPKPRLLSAINDDGSQLGVEDSTKMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFAASASNMNSWIASAQQLRAANCMSQLPVFAAWTDT | 624 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 48271738 | 48274877 | + | Lag0013197.1 | Lac1g2705 | 596276 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2705 | 624 | FunFam | AP2-like ethylene-responsive transcription factor | 390 | 451 | - | - | |
Lac1g2705 | 624 | SUPERFAMILY | DNA-binding domain | 390 | 450 | IPR016177 | GO:0003677(InterPro) | |
Lac1g2705 | 624 | Coils | Coil | 356 | 376 | - | - | |
Lac1g2705 | 624 | SMART | rav1_2 | 292 | 361 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2705 | 624 | SMART | rav1_2 | 391 | 455 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2705 | 624 | SUPERFAMILY | DNA-binding domain | 291 | 357 | IPR016177 | GO:0003677(InterPro) | |
Lac1g2705 | 624 | ProSiteProfiles | AP2/ERF domain profile. | 391 | 449 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2705 | 624 | CDD | AP2 | 291 | 355 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2705 | 624 | MobiDBLite | consensus disorder prediction | 480 | 509 | - | - | |
Lac1g2705 | 624 | CDD | AP2 | 390 | 451 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2705 | 624 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 291 | 357 | - | - | |
Lac1g2705 | 624 | ProSiteProfiles | AP2/ERF domain profile. | 292 | 355 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2705 | 624 | PRINTS | Ethylene responsive element binding protein signature | 431 | 451 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2705 | 624 | PRINTS | Ethylene responsive element binding protein signature | 293 | 304 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2705 | 624 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 210 | 517 | - | - | |
Lac1g2705 | 624 | Pfam | AP2 domain | 292 | 347 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2705 | 624 | Pfam | AP2 domain | 392 | 442 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2705 | 624 | Gene3D | AP2/ERF domain | 291 | 357 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2705 | 624 | Gene3D | AP2/ERF domain | 391 | 451 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2705 | 624 | MobiDBLite | consensus disorder prediction | 470 | 509 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g2483 | Lac-Chr12:41881581 | Lac1g2705 | Lac-Chr1:48271738 | 1.50E-99 | dispersed | |
Lac1g2705 | Lac-Chr1:48271738 | Lac6g1794 | Lac-Chr6:28856523 | 1.10E-92 | dispersed | |
Lac1g2705 | Lac-Chr1:48271738 | Lac2g0425 | Lac-Chr2:3095792 | 7.80E-136 | wgd | |
Lac1g2705 | Lac-Chr1:48271738 | Lac6g0226 | Lac-Chr6:1805209 | 1.30E-138 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23322 | PF00847 | AP2 | 4.00E-10 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g2705 | K09285 | - | csv:101203323 | 1161.36 |