Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2705 ATGAATAATGTTAATGGCAACAACTGTAACTGGCTAGGTTTTTCTGTCTCCCCTAACGTTAACATGGAGCTTTCTTCTTCCTCTGCTACTTCTGTCTCCTCTTCAATTCCTGCAAATCTTTTTCACTCCCCATCTCAGCATAACTATGGCATTTGCTATGGTGTTGATGGAGAACATGGTGGCTTTTATTCACCATTGTCTGTCATGCCACTCAAGTCTGATGGCTCAATTTGTTCAATGGAAGCTCTCAGTAGGCAGCATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGCGGTGCAACTATGGGGTCCCATCACTATGAAAGTAATGACAGTGTAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAACCCTTTGCACATTTCTCATCCTTAAGAAGCCGTGAAATGATGCTTCAAGACTCTAAGGTAATCCTACCTGATGGGTGCAATATGCAGCAGCAGCAGCAGCACCCAACAGTGGCGGAGAGTGAGATTTCTGGTATGAAGAATTGGGCTGTTCCAAGGAACTATGCTGTCACTAATAATAGTTCATTCGAGCAGAAAATGGTGAGTTGCATGAGTGAAAATGGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGTGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACGGCCACACAGCATGTCTCACCCGCCATGGCTGACTGTTCTGCCATGGATACAAAGAAAAGAGGCCACGAGAAGCTGGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGACACCTTTGGACAGAGAACCTCTCAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGGAGGTTATGATATGGAAGAAAAGGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAACTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGGAGAAGCAGTGGGTTCTCGAGGGGGGCCTCGATTTACAGAGGCGTGACAAGACATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGCAATAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCGGCCGAGGCCTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCTGTTACTAATTTCGACATTACGAGGTATGACGTGGAGCGGATCATCGCAAGCAATACCCTGCTTAGTGGTGATCTAGCTAAGAGAAAGCAGCAGCCAGAGTTTGATAATGAATCTCTTAGACAAAGCCCTCCAACTCACAACAGCAATTCAGAAGCCATGCCTTTGCCCTCACAGAGTAGTCAAAGTGAATCAGACTGGAAGATGGCTCTTTATCAGTCATCTCAGCAGCTCATTCCAAAACCTCGGTTGTTATCTGCGATAAACGATGATGGATCACAACTAGGAGTCGAAGACTCCACCAAAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACCAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGCCCAGACAAGACGAGCCTTTCAATGGTGTTCGGAATGCCTCAATCGACATCTAAGCCGTTTGCTGCCTCAGCTAGTAATATGAACTCCTGGATTGCATCTGCCCAGCAGTTGAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA 1875 46.19 MNNVNGNNCNWLGFSVSPNVNMELSSSSATSVSSSIPANLFHSPSQHNYGICYGVDGEHGGFYSPLSVMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDSVAMALSLDSIFCHQNPTHEPNNQPFAHFSSLRSREMMLQDSKVILPDGCNMQQQQQHPTVAESEISGMKNWAVPRNYAVTNNSSFEQKMVSCMSENGGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTATQHVSPAMADCSAMDTKKRGHEKLDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRQSPPTHNSNSEAMPLPSQSSQSESDWKMALYQSSQQLIPKPRLLSAINDDGSQLGVEDSTKMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFAASASNMNSWIASAQQLRAANCMSQLPVFAAWTDT 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48271738 48274877 + Lag0013197.1 Lac1g2705 596276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2705 624 FunFam AP2-like ethylene-responsive transcription factor 390 451 - -
Lac1g2705 624 SUPERFAMILY DNA-binding domain 390 450 IPR016177 GO:0003677(InterPro)
Lac1g2705 624 Coils Coil 356 376 - -
Lac1g2705 624 SMART rav1_2 292 361 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2705 624 SMART rav1_2 391 455 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2705 624 SUPERFAMILY DNA-binding domain 291 357 IPR016177 GO:0003677(InterPro)
Lac1g2705 624 ProSiteProfiles AP2/ERF domain profile. 391 449 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2705 624 CDD AP2 291 355 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2705 624 MobiDBLite consensus disorder prediction 480 509 - -
Lac1g2705 624 CDD AP2 390 451 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2705 624 FunFam AP2-like ethylene-responsive transcription factor ANT 291 357 - -
Lac1g2705 624 ProSiteProfiles AP2/ERF domain profile. 292 355 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2705 624 PRINTS Ethylene responsive element binding protein signature 431 451 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2705 624 PRINTS Ethylene responsive element binding protein signature 293 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2705 624 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 210 517 - -
Lac1g2705 624 Pfam AP2 domain 292 347 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2705 624 Pfam AP2 domain 392 442 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2705 624 Gene3D AP2/ERF domain 291 357 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2705 624 Gene3D AP2/ERF domain 391 451 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2705 624 MobiDBLite consensus disorder prediction 470 509 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2483 Lac-Chr12:41881581 Lac1g2705 Lac-Chr1:48271738 1.50E-99 dispersed
Lac1g2705 Lac-Chr1:48271738 Lac6g1794 Lac-Chr6:28856523 1.10E-92 dispersed
Lac1g2705 Lac-Chr1:48271738 Lac2g0425 Lac-Chr2:3095792 7.80E-136 wgd
Lac1g2705 Lac-Chr1:48271738 Lac6g0226 Lac-Chr6:1805209 1.30E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23322 PF00847 AP2 4.00E-10 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2705 K09285 - csv:101203323 1161.36