Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2717 ATGAGGGGGATATCAGTAGTGGGGTACATATGGTCAACCTATCCTTCTACTCGGCTTGGGATTGACGCTTCCCTCGAAACCGGCCGATCTTTCTCACAAACCCAAGAAGCTGCCCGTCGATTTCTTCTCCTTTTCTGCCGCCGAATCAGAGCCCTCTTTGACTCTGGGCTTTCTACTGCCGATACTTACCCGCACCCTGCGCCTGACGCCGCTGACTTGTGTCGCCAACCGTCCCCTCACAGCGCGGTCTCGTCCTTCTCCGGCGGCAGGGTTGTCAAGCGTGAAAGAGACGTTTCCGGTGAGGATCTTGAAGAAGAGAAAGCTTCTTCTCGAGTTAGTGATGAAGACGAAGATGGGTCTAATGCCAGGAAAAAACTTAGGCTAACTAAAGAACAATCTGCCCTCTTGGAGGAGAGCTTCAAACTTCACAGCACTCTCAACCCTAAGCAAAAGCAAGCCTTAGCCAGAGAGTTAAATCTTCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACAAAGCTAAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACGGACGAAAACAGGAGGCTGCAAAAAGAGCTGCAGGAACTAAAAGCCCTGAAACTAGCGCAGCCTCTGTTCATGCAAATGCCGGCGGCGACACTCACCATGTGCCCGTCCTGCGAGAGGATCGGCGGCGGTGGCGCCGCCGTTAACGGCGACGGAAATTCTAAGGGCCCATTTTCGATGGCTCCCAAGGCCCGGTTTTACAAAGCCTTCACCAATCCTTCTGCTGCTTGCTAA 819 52.38 MRGISVVGYIWSTYPSTRLGIDASLETGRSFSQTQEAARRFLLLFCRRIRALFDSGLSTADTYPHPAPDAADLCRQPSPHSAVSSFSGGRVVKRERDVSGEDLEEEKASSRVSDEDEDGSNARKKLRLTKEQSALLEESFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAQPLFMQMPAATLTMCPSCERIGGGGAAVNGDGNSKGPFSMAPKARFYKAFTNPSAAC 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48403763 48405019 + Lag0013209.1 Lac1g2717 596288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2717 272 SUPERFAMILY Homeodomain-like 113 180 IPR009057 -
Lac1g2717 272 Gene3D - 116 184 - -
Lac1g2717 272 MobiDBLite consensus disorder prediction 90 126 - -
Lac1g2717 272 Pfam Homeobox associated leucine zipper 179 213 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2717 272 CDD homeodomain 123 180 IPR001356 GO:0003677(InterPro)
Lac1g2717 272 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 68 242 IPR050762 -
Lac1g2717 272 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac1g2717 272 Coils Coil 185 215 - -
Lac1g2717 272 FunFam Homeobox-leucine zipper protein 18 108 184 - -
Lac1g2717 272 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677(InterPro)
Lac1g2717 272 SMART halz 179 222 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g2717 272 SMART HOX_1 121 183 IPR001356 GO:0003677(InterPro)
Lac1g2717 272 MobiDBLite consensus disorder prediction 68 126 - -
Lac1g2717 272 Pfam Homeodomain 123 177 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2717 Lac-Chr1:48403763 Lac4g2689 Lac-Chr4:45861947 2.70E-56 dispersed
Lac3g0372 Lac-Chr3:2793190 Lac1g2717 Lac-Chr1:48403763 4.70E-41 transposed
Lac5g0372 Lac-Chr5:3914509 Lac1g2717 Lac-Chr1:48403763 1.10E-54 transposed
Lac8g1538 Lac-Chr8:32998377 Lac1g2717 Lac-Chr1:48403763 2.10E-35 transposed
Lac1g2717 Lac-Chr1:48403763 Lac2g0434 Lac-Chr2:3199286 2.70E-56 wgd
Lac1g2717 Lac-Chr1:48403763 Lac5g1885 Lac-Chr5:37163796 1.60E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23324 PF00046 Homeodomain 5.10E-16 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2717 K09338 - csv:101218782 367.851