Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2728 ATGCAATTTGTTGTTGTTATTCTCCTTCTGCAACTTCAACTGCAACTTCTGCAACTTCACTTTTCCCCTTCCTTCTCTGCCCTCCTAACTCAATCCCAAGCCCTTCTCTCTCTCAGAAACTCCATGTCCGATGACCCTCGTTCTTCTCTCTCCTCCTGGAACGCCATCACCGGCCACTGCACCTGGGCCGGAGTCACATGCGACGCCCGCGGCCGCGTCGTCGCCCTCGACCTCTCTTCCCTCGACCTCACCGGCACCCTTTCCCCTGACCTTGCCTCTCTTCCATTTCTCACCAATGTTTCCTTCGACCTCAACAAGTTTTCCGGCGGAATCCCACCGGAGATTTCATCGATTTCTTCTCTCCGGCATCTCAATCTCTCTAGCAACGTCCTCAATGGGTCGATTCCTCGCGAGTTTTCGCAGCTGAAGAATCTACTGGTTCTTGATGTTTATAACAATAACATGACCGGCGATTTCCCCATAGTGGTCACTGAAATGCCCAACCTCCGCCATTTGCAGCTTGGGGGAAATTTCTTCACCGGTCGGATCCCTCCGGAGGTCGGACGCTTGCAGTCCTTGGAGTTTTTGGCGGTTCAGGGCAATGACCTTGAAGGTCCGATACCGGCGGCGATCGGAAACTTGACCAAGCTTCGGGAACTCTTCATTGGTTACTACAATACCTTCGTCGGTGGAATTCCGGCGGCGATAGGGAACTTGACGGAGTTAGTTCTGTTAGACGCCGCGAGCTGTGGGTTGTCTGGAAAGCTCCCGCCCGAGCTCGGGAAGTTGCAGAAGCTCACTAAACTGTTCCTTCAACAAAATGCTCTGTCTGGGCCATTGCCGGCACTTAACGGATTGAAGAGCATAGAAGCGTTTGATATATCATGCAATATTCTTGTTGGTGAAATACCCATTTCTTTTGCAGAGTTTAAGAACTTGAAGCTATTGCAACTTTTCGACAACAAGCTCTCCGGGGAAATTCCGCGATTCCTAGGCGACCTTCCAAAGCTGGAGATATTGCAGTTATGGAACAACAATTTCACAGGTTCGATTCCTCGGAATTTGGGGAAGAACGGAATGATTCGGATTTTTGATCTTGCTTTCAACCAGTTGACAGGTACGATTCCTCCTGAAATTTGCCATGGGAATAAGCTTGAAGTTTTGATCGCTATGGGCAATTCCCTGTCTGGTTCGATCCCGGAGTCATTAGGAAATTGTATTTCACTTACGCGTATTCTTCTGTGGGGCAACGCTCTCAATGGATCAATCCCCAAGAGGCTTTTGAGTTTGCCAAATCTCTCTCAGGTTGATTTGCACGACAATTTTCTATCCGGAGAACTTCCCATAAACGATCCTGTCTCAGTAAGCCTTCTTCAGATTAGTTTATCGAACAATATGCTCTCTGGATCCTTGCCGCCCACCATCGGCAGCCTTTTGGCCGTTCAGAAGCTTCTTCTTGACCGGAATGAGTTTTCCGGTCAGATTCCTTCAAAGATTGGGAGATTACAGCAACTGTCTCGGATAAATTTCAGCCACAATAAGTTCTCTGGTAGAATTGTGGCGGAGATAAGTGAGTGCAAGCACTTGATCTTCCTTGATCTCAGTGGAAATGAGCTTTCTGGTGAAATTCCTAACAATATTACCAACATGAAGTTATTGACTTATATGAATCTCTCAAGAAACCATTTAGTTGGGTCCATTCCTGCTTCAATTGTTAATATGCAGAGCTTAACCTCTGTGGACTTTTCATACAACAATCTCTCTGGTTTGGTTTTGGGAACTGGGCAGTTTGGTTACTTCAATTACACATCATTTCTAGGCAACCCTTATCTCTGTGGCGCATATTTGGGGCCTTGCAAAGATGGGGTTGGCACTAGCAATCAGCAACAACATATGAAAGGCTCTCTCTCAACTCCTCTCAGGCTCCTGCTAGTTTTTGGTTTTTTTTTTTGTTTAATTGCTGTGACCTTTGCATTGATCTTCAAAGTTCGGTCATTGAAGAGAGCAAGGGAGTTTAGAGGATGGAGATTAACAGCCTTCCAACGCTTGAGTTTCTCAGTTGATGAGGTCTTAGATTGCCTGAAGAAGGAAAGTGTTATTGTAAAAGGATGTTATGGCACAGTGTATGAAGGAGTGATGCCAAGTGGTGATCAGGTGACTGTGAAAAGGCTTCCAAAGATGAGCAATGGGTGTTCTAATGATCATGGATTCGATGCCGAGATACAAGCTCTTGGGAGGATTCGACACCGTCACATCGTAAGATTATTGGGTTTCTGTTCAAACCACGACACTAATCTTTTGATATATGAGTACATGCCTAATGGGAGCCTCTTTGAGGTTCTCCATGGCAAGAAAGGAGGTCACTTGCTCTGGGATACGAGGTACAAGATAGCCATTGGAACTGCGAATGGACTATGCTACCTTCACCACCATTGCTCACCGCCGATTGTTCATCGAGATGTGAAATCAAACAACATCATGCTCGATACCAATTTCGATGCTCAGGTTGCGAATTCCGGGCTTGCGAAGTTCTTAAGAGATTCAGGCACATTGGATAGACCAGCTCTAGCGCCAGAACATGTCTATACTCAGGAAGCCGATGAGAAGTGGGACGTATATAGCTTTGGTGTCGTCCTCTTGGAACTTGTTAGCGGTAGGAATGCAGTCAGAGAATTAAGCACCGGTGTTGACATAGTTCAATGGATAAGACAAATGACAGACTCCGAAAAGGAAGCAATATTTAAAATTGTCGATCAAAGACTCTCCTCTGTCCCTCTCGACGAGGTGATGCACGTACTCAATGTCGCCATGCTCTGCACTGAAGAAGAGGCAGCAAAGCGTCCCACGATGCGGGAAGTCGTGCGGATCTTAACGGAGCATCAGCAACAATCATTGTCAAACGATGATAGAGATACTTGA 2919 46.49 MQFVVVILLLQLQLQLLQLHFSPSFSALLTQSQALLSLRNSMSDDPRSSLSSWNAITGHCTWAGVTCDARGRVVALDLSSLDLTGTLSPDLASLPFLTNVSFDLNKFSGGIPPEISSISSLRHLNLSSNVLNGSIPREFSQLKNLLVLDVYNNNMTGDFPIVVTEMPNLRHLQLGGNFFTGRIPPEVGRLQSLEFLAVQGNDLEGPIPAAIGNLTKLRELFIGYYNTFVGGIPAAIGNLTELVLLDAASCGLSGKLPPELGKLQKLTKLFLQQNALSGPLPALNGLKSIEAFDISCNILVGEIPISFAEFKNLKLLQLFDNKLSGEIPRFLGDLPKLEILQLWNNNFTGSIPRNLGKNGMIRIFDLAFNQLTGTIPPEICHGNKLEVLIAMGNSLSGSIPESLGNCISLTRILLWGNALNGSIPKRLLSLPNLSQVDLHDNFLSGELPINDPVSVSLLQISLSNNMLSGSLPPTIGSLLAVQKLLLDRNEFSGQIPSKIGRLQQLSRINFSHNKFSGRIVAEISECKHLIFLDLSGNELSGEIPNNITNMKLLTYMNLSRNHLVGSIPASIVNMQSLTSVDFSYNNLSGLVLGTGQFGYFNYTSFLGNPYLCGAYLGPCKDGVGTSNQQQHMKGSLSTPLRLLLVFGFFFCLIAVTFALIFKVRSLKRAREFRGWRLTAFQRLSFSVDEVLDCLKKESVIVKGCYGTVYEGVMPSGDQVTVKRLPKMSNGCSNDHGFDAEIQALGRIRHRHIVRLLGFCSNHDTNLLIYEYMPNGSLFEVLHGKKGGHLLWDTRYKIAIGTANGLCYLHHHCSPPIVHRDVKSNNIMLDTNFDAQVANSGLAKFLRDSGTLDRPALAPEHVYTQEADEKWDVYSFGVVLLELVSGRNAVRELSTGVDIVQWIRQMTDSEKEAIFKIVDQRLSSVPLDEVMHVLNVAMLCTEEEAAKRPTMREVVRILTEHQQQSLSNDDRDT 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48470441 48473608 - Lag0013220.1 Lac1g2728 596299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2728 972 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515(InterPro)
Lac1g2728 972 Pfam Leucine Rich Repeat 361 381 IPR001611 GO:0005515(InterPro)
Lac1g2728 972 Pfam Leucine Rich Repeat 456 478 IPR001611 GO:0005515(InterPro)
Lac1g2728 972 Pfam Leucine Rich Repeat 336 357 IPR001611 GO:0005515(InterPro)
Lac1g2728 972 Pfam Leucine Rich Repeat 528 550 IPR001611 GO:0005515(InterPro)
Lac1g2728 972 Pfam Leucine Rich Repeat 168 190 IPR001611 GO:0005515(InterPro)
Lac1g2728 972 Pfam Leucine Rich Repeat 553 574 IPR001611 GO:0005515(InterPro)
Lac1g2728 972 Pfam Leucine Rich Repeat 384 406 IPR001611 GO:0005515(InterPro)
Lac1g2728 972 SUPERFAMILY L domain-like 361 618 - -
Lac1g2728 972 SMART serkin_6 694 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2728 972 Gene3D Transferase(Phosphotransferase) domain 1 772 971 - -
Lac1g2728 972 Gene3D Phosphorylase Kinase; domain 1 667 771 - -
Lac1g2728 972 SMART LRR_typ_2 166 190 IPR003591 -
Lac1g2728 972 SMART LRR_typ_2 118 142 IPR003591 -
Lac1g2728 972 SMART LRR_typ_2 574 597 IPR003591 -
Lac1g2728 972 SMART LRR_typ_2 334 358 IPR003591 -
Lac1g2728 972 SMART LRR_typ_2 263 286 IPR003591 -
Lac1g2728 972 Pfam Protein tyrosine and serine/threonine kinase 695 957 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2728 972 SUPERFAMILY L domain-like 67 373 - -
Lac1g2728 972 ProSiteProfiles Protein kinase domain profile. 694 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2728 972 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 663 771 - -
Lac1g2728 972 SUPERFAMILY Protein kinase-like (PK-like) 687 957 IPR011009 -
Lac1g2728 972 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Lac1g2728 972 Gene3D Ribonuclease Inhibitor 29 181 IPR032675 -
Lac1g2728 972 Gene3D Ribonuclease Inhibitor 182 283 IPR032675 -
Lac1g2728 972 Gene3D Ribonuclease Inhibitor 360 622 IPR032675 -
Lac1g2728 972 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 772 965 - -
Lac1g2728 972 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 30 139 - -
Lac1g2728 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2728 972 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 960 IPR050647 -
Lac1g2728 972 Gene3D Ribonuclease Inhibitor 284 359 IPR032675 -
Lac1g2728 972 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 140 226 - -
Lac1g2728 972 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 338 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2728 Lac-Chr1:48470441 Lac5g1860 Lac-Chr5:36849506 1.10E-19 dispersed
Lac9g0537 Lac-Chr9:10131478 Lac1g2728 Lac-Chr1:48470441 2.90E-17 dispersed
Lac1g2728 Lac-Chr1:48470441 Lac1g2730 Lac-Chr1:48509523 1.70E-20 proximal
Lac1g2728 Lac-Chr1:48470441 Lac2g0816 Lac-Chr2:6461500 5.20E-62 wgd
Lac1g2728 Lac-Chr1:48470441 Lac6g1049 Lac-Chr6:9609861 6.60E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85926 PF07714 PK_Tyr_Ser-Thr 1.40E-37 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2728 - - - 0.0