Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2730 ATGCGTCTTCTTCTTCTTCTCCTCTGTCTTCTGCAACTCCACATTCACCATTCCTTCTCTGCTCGCGTTTCTGAGTACCGAGCCCTTCTCTCCATCAAAACCTCCATTTCCGGCGACCCCAAATCCTCACTTTCTTCGTGGAACGCCTCCACTAGTCACTGTACTTGGTTTGGGGTCACTTGTGATTTTCGTCGCCATGTCACTGCCCTAGACCTCTCTGGTCTCGGCCTTTCTGGTTCTCTTTCCCCCGATGTTGCCTTTTTGAGGTTTCTTACTAATCTCTCTCTCGCTGCTAATGAGTTTTCCGGTCCAATCCCGCCGGAGATTTCTTCAATCTTTTCGCTTCGGTCCCTTAATCTGTCTAATAATGTGTTCGATGGGTCCTTCCCTTCGCGCCTTTCGCAGCTTAAGAACCTGCAGGTGCTTGACTTGTATAACAACAATATGACTGGGGATTTCCCCATTGTGGTCACCGAAATGATGAGCCTCCGCCATTTGCATTTGGGTGGGAATTTCTTCGCCGGACGGATCCCACCGGAGGTCGGTCGGATGGAGTCCTTGGAGTACTTGGCGGTTTCTGGTAACGAACTTAGCGGTCCGATTCCGCCGGAGATCGGAAACTTGACGAACCTTCGTGAGCTCTACATTGGCTACTTCAACGCCTACGACGGCGGCATTCCGGCAGAGATTGGGAATTTGACGGAGTTGGTACGGTTGGACGCAGCGAACTGTGGACTGTCTGGCCGGATTCCAACGGAGCTGGGAAAGCTGAAGAACCTCGATACTCTATTTCTTCAAGTGAATGCTCTGTCTGGGCCATTGACGCTGGAGATTGGAGAGTTGAAAAGTTTGAAATCGTTGGATTTATCGAACAATATGCTTGTGGGTGAGATTCCCGACTCGTTCGCCGAGTTGAAGAACTTGACACTGTTGAATCTGTTTAGAAACAAGCTACATGGGGCGATTCCTTCCTTTATTGGCGACTTGCCAAAACTGGAGGTGTTGCAGTTATGGGAGAATAATTTCACGGAAGCGATTCCACAGAACCTGGGGAAGAACGGAATGCTTCAGATTTTGGATCTTTCTTCGAACAAGCTGACTGGAACTCTTCCTCCCGATATGTGCTACGGTAATCACCTTCAAACTCTGATCGCATTGAGCAATTTCTTGTTTGGTCCAATTCCTGAGTCACTAGGCAAATGCGTTTCGCTTAATCGCATTCGTATGGGGGAAAATTTCCTCAATGGATCCATTCCAAAGGGGCTTCTGAGTCTGCCGAAGCTCTCCCAGGTTGAGTTACAGGACAATTACCTCTCGGGTGAGTTCCCAATAACCGATTCGATCTCAGTGAATCTCGGCCAGATTAGTCTCTCGAACAACCGCCTCTCTGGGTCGATTCCGCCGACAATCGGCAACTTCTCCGGCGTCCAGAAACTACTTCTCGACGGAAACAAGTTCTCCGGTCAAATCCCACCTGAGATTGGGCGGTTACAGCAGCTGTCGAAGATTGATTTCAGTAACAACAAATTATCGGGTCCAATCGCACCGGAGATCAGCCAATGCAAGCTTCTAACCTTCGTCGATCTCAGCCGAAACGAGCTCTCGGGTGAAATTCCGAACGAGATTACCAGTATGAGGATATTGAATTACCTAAATCTCTCAAAAAACCATTTAGTCGGTGGAATCCCAGCTTCCATAGCCAGCATGCAGAGCTTAACCTCTGTGGATTTCTCATACAACAACCTCTCTGGTTTAGTTCCGGGAAGTGGGCAATTCAGTTATTTCAATTACACATCGTTTTTGGGCAATCCCGATCTCTGCGGCCCATACTTAGGACCATGCAAAGATGGGGTTGCCAATAGCAATTACCAACAACATGTAAAAGGTCCCCTCTCTGCTTCCCTCAAGCTCCTCCTTGTAATTGGTCTGCTTCTTTGCTCAATTGCATTTGCAGTTGCTGCCATCATAAAAGCTCGATCATTAAAGAGAGCCAGTGACTCTCGGGCTTGGAAATTAACATCCTTCCAACGCCTAGATTTCACAGTTGATGATGTTCTCGATTGCTTGAAAGAGGATAACATAATTGGAAAAGGAGGGGCTGGAATTGTCTATAAAGGGGCGATGCCAAGTGGTGACCATGTCGCCGTCAAAAGGCTGCCGGCGATGAGCCGAGGGTCGTCCCATGACCATGGATTCAACGCTGAGATACAAACTCTTGGGAGGATTCGACACAGACACATCGTTAGACTATTGGGATTTTGTTCAAACCATGAGACTAATCTTTTGATCTATGAGTATATGCCTAATGGGAGCTTGGGGGAAGTTCTTCATGGCAAAAAAGGGGGTCACCTTCAGTGGGATACAAGGTATAAGATTGCCATTGAAGCTGCTAAGGGGCTTTGCTATCTCCACCATGATTGCTCGCCACTCATTGTTCATCGAGATGTGAAATCAAACAACATACTTCTTGACACTAATTTTGAAGCTCATGTTGCTGATTTTGGCCTGGCCAAGTTCTTGCAGGATTCTGGCGCTTCTGAGTGCATGTCTGCCATTGCTGGTTCTTACGGATATATTGCCCCAGAGTACGCCTACACACTCAAAGTTGACGAGAAGAGTGACGTGTATAGTTTCGGAGTTGTCCTCTTGGAGCTTGTCAGTGGAAGAAAACCCGTTGGAGAATTCGGGGACGGTGTCGACATAGTTCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGAGGTAGTGAAAGTCCTCGACCCAAGGCTCTCCTCCGTCCCTCTTCACGAAGTGATGCACGTCTTCTACGTTGCAATGCTGTGCGTCGAAGAACAGGCGGTGGAGCGTCCGACAATGCGGGAAGTGATCCAAATCCTATCGGAGATTCCACAGCCACCATGTTCAAAACCAGGAGACTCAACACTCCCCAACTCCTCACCACCACCTCCACCGCCAGCCGCCGCATTGGAGCCCCCAACAACGGGAACCAAGAACAAAAAGGACCAGCAGCAGCAGCCGCAGCCGCCACCGGATCTTCTCAGCATTTGA 3051 48.64 MRLLLLLLCLLQLHIHHSFSARVSEYRALLSIKTSISGDPKSSLSSWNASTSHCTWFGVTCDFRRHVTALDLSGLGLSGSLSPDVAFLRFLTNLSLAANEFSGPIPPEISSIFSLRSLNLSNNVFDGSFPSRLSQLKNLQVLDLYNNNMTGDFPIVVTEMMSLRHLHLGGNFFAGRIPPEVGRMESLEYLAVSGNELSGPIPPEIGNLTNLRELYIGYFNAYDGGIPAEIGNLTELVRLDAANCGLSGRIPTELGKLKNLDTLFLQVNALSGPLTLEIGELKSLKSLDLSNNMLVGEIPDSFAELKNLTLLNLFRNKLHGAIPSFIGDLPKLEVLQLWENNFTEAIPQNLGKNGMLQILDLSSNKLTGTLPPDMCYGNHLQTLIALSNFLFGPIPESLGKCVSLNRIRMGENFLNGSIPKGLLSLPKLSQVELQDNYLSGEFPITDSISVNLGQISLSNNRLSGSIPPTIGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSNNKLSGPIAPEISQCKLLTFVDLSRNELSGEIPNEITSMRILNYLNLSKNHLVGGIPASIASMQSLTSVDFSYNNLSGLVPGSGQFSYFNYTSFLGNPDLCGPYLGPCKDGVANSNYQQHVKGPLSASLKLLLVIGLLLCSIAFAVAAIIKARSLKRASDSRAWKLTSFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPSGDHVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLIYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDTNFEAHVADFGLAKFLQDSGASECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTDSNKEEVVKVLDPRLSSVPLHEVMHVFYVAMLCVEEQAVERPTMREVIQILSEIPQPPCSKPGDSTLPNSSPPPPPPAAALEPPTTGTKNKKDQQQQPQPPPDLLSI 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48509523 48513024 - Lag0013222.1 Lac1g2730 596301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2730 1016 SMART serkin_6 689 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2730 1016 MobiDBLite consensus disorder prediction 976 991 - -
Lac1g2730 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2730 1016 Gene3D Ribonuclease Inhibitor 273 327 IPR032675 -
Lac1g2730 1016 MobiDBLite consensus disorder prediction 963 1016 - -
Lac1g2730 1016 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Lac1g2730 1016 Gene3D Ribonuclease Inhibitor 328 622 IPR032675 -
Lac1g2730 1016 Gene3D Ribonuclease Inhibitor 177 272 IPR032675 -
Lac1g2730 1016 Gene3D Transferase(Phosphotransferase) domain 1 767 969 - -
Lac1g2730 1016 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 82 325 - -
Lac1g2730 1016 SUPERFAMILY RNI-like 70 391 - -
Lac1g2730 1016 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 976 - -
Lac1g2730 1016 SUPERFAMILY Protein kinase-like (PK-like) 681 960 IPR011009 -
Lac1g2730 1016 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 963 IPR050647 -
Lac1g2730 1016 Pfam Protein kinase domain 691 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2730 1016 Pfam Leucine Rich Repeat 451 473 IPR001611 GO:0005515(InterPro)
Lac1g2730 1016 Pfam Leucine Rich Repeat 500 521 IPR001611 GO:0005515(InterPro)
Lac1g2730 1016 Pfam Leucine Rich Repeat 283 305 IPR001611 GO:0005515(InterPro)
Lac1g2730 1016 Pfam Leucine Rich Repeat 477 497 IPR001611 GO:0005515(InterPro)
Lac1g2730 1016 Pfam Leucine Rich Repeat 356 375 IPR001611 GO:0005515(InterPro)
Lac1g2730 1016 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Lac1g2730 1016 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
Lac1g2730 1016 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515(InterPro)
Lac1g2730 1016 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2730 1016 SMART LRR_typ_2 184 208 IPR003591 -
Lac1g2730 1016 SMART LRR_typ_2 329 353 IPR003591 -
Lac1g2730 1016 SMART LRR_typ_2 569 592 IPR003591 -
Lac1g2730 1016 SMART LRR_typ_2 354 377 IPR003591 -
Lac1g2730 1016 SMART LRR_typ_2 281 304 IPR003591 -
Lac1g2730 1016 SMART LRR_typ_2 497 521 IPR003591 -
Lac1g2730 1016 SUPERFAMILY L domain-like 298 614 - -
Lac1g2730 1016 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
Lac1g2730 1016 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Lac1g2730 1016 MobiDBLite consensus disorder prediction 996 1016 - -
Lac1g2730 1016 Gene3D Phosphorylase Kinase; domain 1 655 766 - -
Lac1g2730 1016 Pfam Leucine rich repeat 114 171 IPR001611 GO:0005515(InterPro)
Lac1g2730 1016 Gene3D Ribonuclease Inhibitor 22 176 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2730 Lac-Chr1:48509523 Lac5g1860 Lac-Chr5:36849506 3.60E-21 dispersed
Lac1g2728 Lac-Chr1:48470441 Lac1g2730 Lac-Chr1:48509523 1.70E-20 proximal
Lac11g2576 Lac-Chr11:41814367 Lac1g2730 Lac-Chr1:48509523 9.20E-86 transposed
Lac1g3684 Lac-Chr1:55936633 Lac1g2730 Lac-Chr1:48509523 1.00E-150 transposed
Lac5g1755 Lac-Chr5:35244923 Lac1g2730 Lac-Chr1:48509523 4.20E-06 transposed
Lac6g2876 Lac-Chr6:46380435 Lac1g2730 Lac-Chr1:48509523 1.10E-40 transposed
Lac1g2730 Lac-Chr1:48509523 Lac10g0283 Lac-Chr10:2144811 4.90E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85927 PF07714 PK_Tyr_Ser-Thr 2.40E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2730 - - - 0.0