Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2736 ATGGAAATTTCATCGGCCAAATGGTTATCCGGACTGGAAATGGAGTGTGCATATCAATCCGAGATAATGAACAATCCTCATGCTTACACATTCGATCGTGAGCTCTGTTATCCGATCAATTATCCGGTGGTGGAGTGGCCGGCGGCGGAAAAGATCATTACTTCCGGCCAACTTGATTCTATTAATTGTGCAGCTCATTCTTCCTCTTCTAATTCCCAGTTTATTTCATTTGGGTATCCGATTTTTTGCCCACCAGAAATTGAGAAGTTCAATTATGGGGCTGTGAATTGCGGTGGTGCGATGGAAATTAAGAAGGCTGCAATTATGGATAGACGAGATCATGTTATAGCTGAGAGAAGACGAAGAGAGAAGCTCAGCCAGAAGTTTGTTGCTCTTTCAGCTCTCATCCCTGGCCTCAAGAAGATGGACAAAGCTTCTGTCCTTGGGGGAGCCATCAAGTATGTGAAAGAGCTTCAAGAACGTCTGAAATTGGCTGAGGAAGAAGCAGCAGATCGGAAGAGAGTGATTGAATCCGCCGTGTTTGCAAAAAGAATCCATCTCTCCTCCGACTCTGACAACGAAACCTCCTCTTCGGAGGAGAATCGTGGCGGATTTTTGGTCGGACCGGTTCCTAAGATAGAAACAATGGTTTTGGACAAGGATGTTCTGGTAAGAATTCATTGCAAGAAACACAAGGGCTGTTTTTCAAACATATTAAGCCAAATAGAGAAGCTTAATCTAACAATTGTTAATAGCTGCGTTTTGGCATTTGGCCACTTCAGGCTTGATATAACCATTGTTGCTAAGATGGATGTTGATTTCTGCATGACAGCGACCGATCTTGGGAAGAAGCTTAGAGAGACTTTGGTCGAGTTCATATAA 882 43.54 MEISSAKWLSGLEMECAYQSEIMNNPHAYTFDRELCYPINYPVVEWPAAEKIITSGQLDSINCAAHSSSSNSQFISFGYPIFCPPEIEKFNYGAVNCGGAMEIKKAAIMDRRDHVIAERRRREKLSQKFVALSALIPGLKKMDKASVLGGAIKYVKELQERLKLAEEEAADRKRVIESAVFAKRIHLSSDSDNETSSSEENRGGFLVGPVPKIETMVLDKDVLVRIHCKKHKGCFSNILSQIEKLNLTIVNSCVLAFGHFRLDITIVAKMDVDFCMTATDLGKKLRETLVEFI 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48562172 48563598 - Lag0013228.1 Lac1g2736 596307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2736 293 Coils Coil 148 175 - -
Lac1g2736 293 Gene3D - 109 180 IPR036638 GO:0046983(InterPro)
Lac1g2736 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983(InterPro)
Lac1g2736 293 Pfam Helix-loop-helix DNA-binding domain 111 159 IPR011598 GO:0046983(InterPro)
Lac1g2736 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 170 IPR036638 GO:0046983(InterPro)
Lac1g2736 293 SMART finulus 115 164 IPR011598 GO:0046983(InterPro)
Lac1g2736 293 PANTHER BHLH TRANSCRIPTION FACTOR 65 289 IPR052610 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2736 Lac-Chr1:48562172 Lac5g1857 Lac-Chr5:36810156 1.90E-39 dispersed
Lac1g2735 Lac-Chr1:48537806 Lac1g2736 Lac-Chr1:48562172 1.10E-54 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23327 PF00010 HLH 1.30E-10 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2736 - - - 0.0