Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2750 ATGGAGCTCAGTCAACATGGTTTCTTAGAGGAGTTGTTAGCTTCAACGCCTTGGACCTCTTCATATTCAAATGGCTTCAATGATTTCTTCCAAAATGGCTGGAATTTCGGTTCTTTTGATGAAAATCCCCAAATGGGTTTCTCTAATTTCCCCCATTTTCCTGGCATCCAAACAGCTACTGATTTTTCTTTCACCGACCAACAGTTTTTCAGCAATTTCGTCGAGGGGTTTGCAATGCCGGAGCTGGATTCTTCATCTTACACTAAGAACAACGAAACCCCACCATTTGTTTCGGAAGAAGTGAGTAATAAGAACAGTAGTTACCCTCCGCCGGCGATGGAGGAGGAAGAACTTGGTTTTATGGAGAGTGAAGCGGCTCCGAGTGTCTGCAAAGTGGAAATGGAGCAAATGGGTGGGCCTGAAACTAATGGTTTGAAAATGGGTGTGGGAGAGTTGGGGAAAAGAAGCAACAAGGCTAAGAAGATTGAAGGACAGCCCTCGAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTTAGAGCAATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACAATCGACTATGTGAAAGAGCTGCTTGAGAGAATCAATAACTTGAAAGAAGAAGAGGAAGTTGGTTTAGATTCAAATCATGTGAGCTTAAATGGGATCTTCAAGGAAGGGAAGTCCAATGAAGTTCTAGTGAGAAATTCCCCGAAGTTCGATGTTGAAAAGAGGGAGAGGGAAACTCGAATCGACATTTGCTGTGCGACGAGGCCAGGATTATTGCTGTCCACTGTCAACACGTTAGAAGCATTGGGCCTAGAGATTCAGCAGTGTGTTATTAGCTGTTTCAATGATTTTTCAATGCAAGCTTCTTGTTCAGAGGGAAGTGCTCAGAGAGCAGTGGCAAGTTCTGATGATATAAAGGAGGCATTGTTCAGAAATGCAGGGTATGGAGGGAAGTGCTTGTAG 1017 43.46 MELSQHGFLEELLASTPWTSSYSNGFNDFFQNGWNFGSFDENPQMGFSNFPHFPGIQTATDFSFTDQQFFSNFVEGFAMPELDSSSYTKNNETPPFVSEEVSNKNSSYPPPAMEEEELGFMESEAAPSVCKVEMEQMGGPETNGLKMGVGELGKRSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEEEVGLDSNHVSLNGIFKEGKSNEVLVRNSPKFDVEKRERETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSAQRAVASSDDIKEALFRNAGYGGKCL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48689311 48690646 - Lag0013242.1 Lac1g2750 596321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2750 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983(InterPro)
Lac1g2750 338 MobiDBLite consensus disorder prediction 93 109 - -
Lac1g2750 338 Pfam Plant bHLH transcription factor, ACT-like domain 257 327 IPR054502 -
Lac1g2750 338 MobiDBLite consensus disorder prediction 93 113 - -
Lac1g2750 338 MobiDBLite consensus disorder prediction 138 164 - -
Lac1g2750 338 Pfam Helix-loop-helix DNA-binding domain 171 213 IPR011598 GO:0046983(InterPro)
Lac1g2750 338 Coils Coil 203 223 - -
Lac1g2750 338 Gene3D - 156 227 IPR036638 GO:0046983(InterPro)
Lac1g2750 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 226 IPR036638 GO:0046983(InterPro)
Lac1g2750 338 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 108 333 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac1g2750 338 SMART finulus 170 219 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2750 Lac-Chr1:48689311 Lac8g0052 Lac-Chr8:843746 1.90E-32 dispersed
Lac5g1897 Lac-Chr5:37325760 Lac1g2750 Lac-Chr1:48689311 2.20E-06 transposed
Lac1g2750 Lac-Chr1:48689311 Lac2g0808 Lac-Chr2:6378004 4.40E-77 wgd
Lac1g2750 Lac-Chr1:48689311 Lac5g1857 Lac-Chr5:36810156 2.60E-08 wgd
Lac1g2750 Lac-Chr1:48689311 Lac6g1040 Lac-Chr6:9489029 3.90E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23329 PF00010 HLH 1.90E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2750 - - - 0.0