Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2759 ATGGGTCGAGGGAAGATTGTGATTAGAAGGATTGATAATTCTGCGAGCAGACAAGTGACTTTCTCAAAGAGGAGAAAGGGACTTATTAAAAAGGCTAAAGAGCTCGCAATTCTCTGTGATGCTGAAGTTGGACTCATCATTTTTTCCAGCTCTGGCAAACAGTATGACTTTGCAAACACTAGCATAGAGTCAGTAATTGAGAAATATAACAGGCGGAAGGAGGAAGATGAACTGCTCTTGAATCCAGCTTCGGATGTCAAGTTATGGCAGAAGGAAGTAGCAACTCTAAGGCAACAGCTACTTAACTTGCAAGAGAATAATCGGAAATTAATGGGAGAGCAACTCTATGGTTTATCAATCAAAGACCTAAACAATCTCGAGAGTCAATTGGAGTTCAGTTTACAAAGTATCCGAATTAAAAAGGAACAGATATTAAACGATGAAATAAAAGAATTAAACAGAAAGGGAATTCTGATGCACCAAGAGAATATAGAGCTGAGCAAGAAAGTAAATCTTTTTTGTCAAGAAAACATTGAATTACACAGAAAGGTTTATGGGCATGACTCGAGATCAGAGATGAACATAGCCACCGGAAACGCGTTGATTCCTTATGGAATTATCACCGGCGGCGGCGGCGGCGGCGGCCCAGGTGCAGGCGACGCCGTGCGTGTGCCAATTCATCTTCAGCTCAGCCCGCCGCAGCAACAAAATTAA 714 42.16 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSSGKQYDFANTSIESVIEKYNRRKEEDELLLNPASDVKLWQKEVATLRQQLLNLQENNRKLMGEQLYGLSIKDLNNLESQLEFSLQSIRIKKEQILNDEIKELNRKGILMHQENIELSKKVNLFCQENIELHRKVYGHDSRSEMNIATGNALIPYGIITGGGGGGGPGAGDAVRVPIHLQLSPPQQQN 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48747636 48750404 - Lag0013251.1 Lac1g2759 596330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2759 237 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g2759 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g2759 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac1g2759 237 Coils Coil 123 143 - -
Lac1g2759 237 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac1g2759 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g2759 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g2759 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g2759 237 Pfam K-box region 84 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac1g2759 237 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g2759 237 Coils Coil 86 113 - -
Lac1g2759 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g2759 237 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac1g2759 237 Gene3D - 13 109 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2759 Lac-Chr1:48747636 Lac5g2657 Lac-Chr5:45040827 3.00E-56 dispersed
Lac1g2759 Lac-Chr1:48747636 Lac2g0801 Lac-Chr2:6274321 3.80E-59 wgd
Lac1g2759 Lac-Chr1:48747636 Lac6g1007 Lac-Chr6:9213162 1.10E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23330 PF01486 K-box 5.90E-23 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2759 K09264 - csv:101206453 387.111