Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2760 | ATGGAGAAGAAAGGAAAAAGAAGGACCCAACAGCAATGGATATGGAAGCTTGAGTTCTCGGCAATGGCGCTCCTTTTCTTATTCTTCAGTTTAACGCTCGCCCAACCACAACAACAACAAGATTCGTCTCAACAGTTAGATTCTTTTTCTTCTTCTTCTTCTTCTCGCAACAACAAATCAATGTTGTCACGCGATGTAACGTTAGAATCGCAGAATCATAGACAGGTGGTAATCGACAATGGCATAGTTCGAGTCACTTTTTCTCGTCCAGAAGGCAATGTTATTGGAATAAAATACAATGATCTTGATAACGTACTTGAAATTCACAATGCACATTATAACAGAGGATATTGGGACGTGGTTTGGAACCGCCCAAATAAACCTAGTGCCACTGACAGAGTAAGGGCAACCGATTTCAAGGTGATTACGGCCACCAGTGACCAAGTAGAGCTTTCATTCACCAAAAATTGGGATCCTTCAGACTCTTCGTCGCTCCCTTTGAACATAGACAAGAGGTATATTCTGCGGCGAGGCGATTCCGGATTCTATGCATATGGCATATTTGAACGGCTGGATGGATGGCCTCAGATTGACGTGGATCAGATCAGAATCGTCTACAAAGTCCAAAGAGACAAATTTCATTACATGGCGGTATCGGACGACAGACAGAGGATCATGCCAACTCTACAGGACCGAATGACCGGGCAGCCTCTCGCTTTTAAGGAGGCGGTTCTCTTAACCCAACCCATGAATTCAAACCTGAGAGGAGAGGTGGACGATAAGTACCAGTACTCGATAGAGAACATGGATAATAAGGTCCATGGATGGGTGTCCAGGGACCCACAGGTGGGGTTCTGGATGATCACACCCAGTGACGAGTTTCGTACGGCTGGGCCCCTCAAGCAAGAACTCACTTCCCATGTCGGCCCCACCACCCTTTCCATGTTCGTGAGTACGCATTACGCGGGTAAAGAAGTATCCATGAGATTTGGAGAGGGAGAAGCATGGAAGAAGGTTTTCGGACCGGTCTTCATTTATCTCAACTCGGACCCCACCGGCACTGAAACTCCCGGTTCACTCTGGGAAGATGCTAAAAACCAGATGTTGGTAGAAACGAGCAAGTGGCCATACAGCTTTGTGGAGTACGAAGATTTTCCATCCTCAGACGAAAGAGGCAGCGTGGCTGGTCGATTAATAGTCCGTGATGGATACGCCGAGCAATGGTTGACGTGGGCCGACTCTGCGTTTGTGGGCCTTGCAGCTCCCGGTGAATTGGGGTCCTGGCAAAGAGAAAGCAAGGGATATCAATTCTGGACACGAACGGACCAGCAAGGACATTTCTCCATTCAAAACGTAAGGCCTGGAAACTACAATCTCTACGCATGGGTGCCTGGCGTCATCGGCGATTACAAGTACGACGGCGACATCACCGTCACGCCGGCCAGTTCCACCAGCCTCAGCATGCTCATCTACGACCCTCCAAGACGAGGCCCAACTCTCTGGGAGATCGGCATCCCAGACCGGACGGCGGCCGAGTTCTTTGTACCCGATCCCGAACCCACCCGCATTAACCGCTTCTACAAAAATTCCAAAATTCAAACCTCAGATAAGTTCCGACAGTACGGCCTCTGGGAACGCTACGCCGATTTATACCCCCTTGAGGATCTGGTCTACACCGTCGGAACCGACGACTACCGCCGCCACTGGTTCTACGCTCACGTCACCAGAGCCACCGGATACGGGACCTACCAGGCTACAACGTGGCAGATCGTGTTTCGTCTAGAAGGGCCCATACAGACCGGAAACTATACGCTCCGGTTGGCCTTGGCCTCCTCCACCCAATCGGTGGTCGACATCCGGTTCAACAACCCGTCGGCCAGACGGGCTCATTTCTCGACCGGGTATCAGTCTGCAGGAAAAGATAACGCTATCGCAAGACATGGCATTCATGGGCTTTATTGGTTGTTCAACTTCGACGTTCCAAGTGGATATTTGGTTGATGGAAACAACGTAATCTATCTAACACAAAGAAGACATATGGGGCCTTTCCAAGGAGTAATGTACGACTACATACGATTCGAAGGTGTAGAATAA | 2094 | 49.52 | MEKKGKRRTQQQWIWKLEFSAMALLFLFFSLTLAQPQQQQDSSQQLDSFSSSSSSRNNKSMLSRDVTLESQNHRQVVIDNGIVRVTFSRPEGNVIGIKYNDLDNVLEIHNAHYNRGYWDVVWNRPNKPSATDRVRATDFKVITATSDQVELSFTKNWDPSDSSSLPLNIDKRYILRRGDSGFYAYGIFERLDGWPQIDVDQIRIVYKVQRDKFHYMAVSDDRQRIMPTLQDRMTGQPLAFKEAVLLTQPMNSNLRGEVDDKYQYSIENMDNKVHGWVSRDPQVGFWMITPSDEFRTAGPLKQELTSHVGPTTLSMFVSTHYAGKEVSMRFGEGEAWKKVFGPVFIYLNSDPTGTETPGSLWEDAKNQMLVETSKWPYSFVEYEDFPSSDERGSVAGRLIVRDGYAEQWLTWADSAFVGLAAPGELGSWQRESKGYQFWTRTDQQGHFSIQNVRPGNYNLYAWVPGVIGDYKYDGDITVTPASSTSLSMLIYDPPRRGPTLWEIGIPDRTAAEFFVPDPEPTRINRFYKNSKIQTSDKFRQYGLWERYADLYPLEDLVYTVGTDDYRRHWFYAHVTRATGYGTYQATTWQIVFRLEGPIQTGNYTLRLALASSTQSVVDIRFNNPSARRAHFSTGYQSAGKDNAIARHGIHGLYWLFNFDVPSGYLVDGNNVIYLTQRRHMGPFQGVMYDYIRFEGVE | 697 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 48756583 | 48760506 | + | Lag0013252.1 | Lac1g2760 | 596331 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2760 | 697 | Pfam | Polysaccharide lyase family 4, domain III | 499 | 693 | IPR029411 | - | |
Lac1g2760 | 697 | MobiDBLite | consensus disorder prediction | 42 | 65 | - | - | |
Lac1g2760 | 697 | Gene3D | - | 387 | 488 | - | - | |
Lac1g2760 | 697 | CDD | RGL4_C | 501 | 694 | - | - | |
Lac1g2760 | 697 | SUPERFAMILY | Galactose-binding domain-like | 497 | 694 | IPR008979 | - | |
Lac1g2760 | 697 | CDD | RGL4_N | 74 | 352 | - | - | |
Lac1g2760 | 697 | FunFam | Rhamnogalacturonate lyase B | 387 | 486 | - | - | |
Lac1g2760 | 697 | Gene3D | - | 67 | 362 | IPR014718 | GO:0030246(InterPro) | |
Lac1g2760 | 697 | SUPERFAMILY | Galactose mutarotase-like | 70 | 352 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Lac1g2760 | 697 | SUPERFAMILY | Starch-binding domain-like | 388 | 488 | IPR013784 | GO:0030246(InterPro) | |
Lac1g2760 | 697 | Gene3D | - | 497 | 693 | - | - | |
Lac1g2760 | 697 | Pfam | Polysaccharide lyase family 4, domain II | 413 | 485 | IPR029413 | - | |
Lac1g2760 | 697 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 57 | 695 | IPR051850 | - | |
Lac1g2760 | 697 | Pfam | Rhamnogalacturonate lyase family | 58 | 258 | IPR010325 | - | |
Lac1g2760 | 697 | CDD | RGL4_M | 390 | 486 | IPR029413 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2760 | Lac-Chr1:48756583 | Lac2g0798 | Lac-Chr2:6247878 | 3.30E-220 | dispersed | |
Lac1g2760 | Lac-Chr1:48756583 | Lac2g0796 | Lac-Chr2:6230649 | 3.30E-212 | wgd | |
Lac1g2760 | Lac-Chr1:48756583 | Lac5g1848 | Lac-Chr5:36687020 | 3.40E-241 | wgd | |
Lac1g2760 | Lac-Chr1:48756583 | Lac6g0987 | Lac-Chr6:8946403 | 2.80E-211 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g2760 | K18195 | - | csv:101206696 | 1043.11 |