Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2760 ATGGAGAAGAAAGGAAAAAGAAGGACCCAACAGCAATGGATATGGAAGCTTGAGTTCTCGGCAATGGCGCTCCTTTTCTTATTCTTCAGTTTAACGCTCGCCCAACCACAACAACAACAAGATTCGTCTCAACAGTTAGATTCTTTTTCTTCTTCTTCTTCTTCTCGCAACAACAAATCAATGTTGTCACGCGATGTAACGTTAGAATCGCAGAATCATAGACAGGTGGTAATCGACAATGGCATAGTTCGAGTCACTTTTTCTCGTCCAGAAGGCAATGTTATTGGAATAAAATACAATGATCTTGATAACGTACTTGAAATTCACAATGCACATTATAACAGAGGATATTGGGACGTGGTTTGGAACCGCCCAAATAAACCTAGTGCCACTGACAGAGTAAGGGCAACCGATTTCAAGGTGATTACGGCCACCAGTGACCAAGTAGAGCTTTCATTCACCAAAAATTGGGATCCTTCAGACTCTTCGTCGCTCCCTTTGAACATAGACAAGAGGTATATTCTGCGGCGAGGCGATTCCGGATTCTATGCATATGGCATATTTGAACGGCTGGATGGATGGCCTCAGATTGACGTGGATCAGATCAGAATCGTCTACAAAGTCCAAAGAGACAAATTTCATTACATGGCGGTATCGGACGACAGACAGAGGATCATGCCAACTCTACAGGACCGAATGACCGGGCAGCCTCTCGCTTTTAAGGAGGCGGTTCTCTTAACCCAACCCATGAATTCAAACCTGAGAGGAGAGGTGGACGATAAGTACCAGTACTCGATAGAGAACATGGATAATAAGGTCCATGGATGGGTGTCCAGGGACCCACAGGTGGGGTTCTGGATGATCACACCCAGTGACGAGTTTCGTACGGCTGGGCCCCTCAAGCAAGAACTCACTTCCCATGTCGGCCCCACCACCCTTTCCATGTTCGTGAGTACGCATTACGCGGGTAAAGAAGTATCCATGAGATTTGGAGAGGGAGAAGCATGGAAGAAGGTTTTCGGACCGGTCTTCATTTATCTCAACTCGGACCCCACCGGCACTGAAACTCCCGGTTCACTCTGGGAAGATGCTAAAAACCAGATGTTGGTAGAAACGAGCAAGTGGCCATACAGCTTTGTGGAGTACGAAGATTTTCCATCCTCAGACGAAAGAGGCAGCGTGGCTGGTCGATTAATAGTCCGTGATGGATACGCCGAGCAATGGTTGACGTGGGCCGACTCTGCGTTTGTGGGCCTTGCAGCTCCCGGTGAATTGGGGTCCTGGCAAAGAGAAAGCAAGGGATATCAATTCTGGACACGAACGGACCAGCAAGGACATTTCTCCATTCAAAACGTAAGGCCTGGAAACTACAATCTCTACGCATGGGTGCCTGGCGTCATCGGCGATTACAAGTACGACGGCGACATCACCGTCACGCCGGCCAGTTCCACCAGCCTCAGCATGCTCATCTACGACCCTCCAAGACGAGGCCCAACTCTCTGGGAGATCGGCATCCCAGACCGGACGGCGGCCGAGTTCTTTGTACCCGATCCCGAACCCACCCGCATTAACCGCTTCTACAAAAATTCCAAAATTCAAACCTCAGATAAGTTCCGACAGTACGGCCTCTGGGAACGCTACGCCGATTTATACCCCCTTGAGGATCTGGTCTACACCGTCGGAACCGACGACTACCGCCGCCACTGGTTCTACGCTCACGTCACCAGAGCCACCGGATACGGGACCTACCAGGCTACAACGTGGCAGATCGTGTTTCGTCTAGAAGGGCCCATACAGACCGGAAACTATACGCTCCGGTTGGCCTTGGCCTCCTCCACCCAATCGGTGGTCGACATCCGGTTCAACAACCCGTCGGCCAGACGGGCTCATTTCTCGACCGGGTATCAGTCTGCAGGAAAAGATAACGCTATCGCAAGACATGGCATTCATGGGCTTTATTGGTTGTTCAACTTCGACGTTCCAAGTGGATATTTGGTTGATGGAAACAACGTAATCTATCTAACACAAAGAAGACATATGGGGCCTTTCCAAGGAGTAATGTACGACTACATACGATTCGAAGGTGTAGAATAA 2094 49.52 MEKKGKRRTQQQWIWKLEFSAMALLFLFFSLTLAQPQQQQDSSQQLDSFSSSSSSRNNKSMLSRDVTLESQNHRQVVIDNGIVRVTFSRPEGNVIGIKYNDLDNVLEIHNAHYNRGYWDVVWNRPNKPSATDRVRATDFKVITATSDQVELSFTKNWDPSDSSSLPLNIDKRYILRRGDSGFYAYGIFERLDGWPQIDVDQIRIVYKVQRDKFHYMAVSDDRQRIMPTLQDRMTGQPLAFKEAVLLTQPMNSNLRGEVDDKYQYSIENMDNKVHGWVSRDPQVGFWMITPSDEFRTAGPLKQELTSHVGPTTLSMFVSTHYAGKEVSMRFGEGEAWKKVFGPVFIYLNSDPTGTETPGSLWEDAKNQMLVETSKWPYSFVEYEDFPSSDERGSVAGRLIVRDGYAEQWLTWADSAFVGLAAPGELGSWQRESKGYQFWTRTDQQGHFSIQNVRPGNYNLYAWVPGVIGDYKYDGDITVTPASSTSLSMLIYDPPRRGPTLWEIGIPDRTAAEFFVPDPEPTRINRFYKNSKIQTSDKFRQYGLWERYADLYPLEDLVYTVGTDDYRRHWFYAHVTRATGYGTYQATTWQIVFRLEGPIQTGNYTLRLALASSTQSVVDIRFNNPSARRAHFSTGYQSAGKDNAIARHGIHGLYWLFNFDVPSGYLVDGNNVIYLTQRRHMGPFQGVMYDYIRFEGVE 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48756583 48760506 + Lag0013252.1 Lac1g2760 596331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2760 697 Pfam Polysaccharide lyase family 4, domain III 499 693 IPR029411 -
Lac1g2760 697 MobiDBLite consensus disorder prediction 42 65 - -
Lac1g2760 697 Gene3D - 387 488 - -
Lac1g2760 697 CDD RGL4_C 501 694 - -
Lac1g2760 697 SUPERFAMILY Galactose-binding domain-like 497 694 IPR008979 -
Lac1g2760 697 CDD RGL4_N 74 352 - -
Lac1g2760 697 FunFam Rhamnogalacturonate lyase B 387 486 - -
Lac1g2760 697 Gene3D - 67 362 IPR014718 GO:0030246(InterPro)
Lac1g2760 697 SUPERFAMILY Galactose mutarotase-like 70 352 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Lac1g2760 697 SUPERFAMILY Starch-binding domain-like 388 488 IPR013784 GO:0030246(InterPro)
Lac1g2760 697 Gene3D - 497 693 - -
Lac1g2760 697 Pfam Polysaccharide lyase family 4, domain II 413 485 IPR029413 -
Lac1g2760 697 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 57 695 IPR051850 -
Lac1g2760 697 Pfam Rhamnogalacturonate lyase family 58 258 IPR010325 -
Lac1g2760 697 CDD RGL4_M 390 486 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2760 Lac-Chr1:48756583 Lac2g0798 Lac-Chr2:6247878 3.30E-220 dispersed
Lac1g2760 Lac-Chr1:48756583 Lac2g0796 Lac-Chr2:6230649 3.30E-212 wgd
Lac1g2760 Lac-Chr1:48756583 Lac5g1848 Lac-Chr5:36687020 3.40E-241 wgd
Lac1g2760 Lac-Chr1:48756583 Lac6g0987 Lac-Chr6:8946403 2.80E-211 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2760 K18195 - csv:101206696 1043.11