Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g2761 | ATGGGCAAATCACTCGACCAAGACCACTCCAAGAACGCCTTCGGATGGGCTGCCACTGATACCTCCGGCGTTCTTTCTCCCTTCCATTTCTCCAGAAGAGAAACAGGGGAAAAGGATGTGGCTCTCAAAGTTCTTTACTGTGGGATTTGCCATTCTGATCTTCACATGGTGAAGAATGAATGGCGCAATGCCATTTACCCTATTGTTCCTGGACATGAAATCGTGGGTGAAGTAACGGAGGTTGGAAGCAAAGTGGAGAAATTCAAGGTCGGGGATAGAGTTGGCGTAGGATGTATAGTTGGATCCTGCCGCTCCTGTGATGAATGTTCTAACCACCTTGAGAACTATTGCCCCAAATTGATTCTCACATACAATTCCAGACTCTCCGATGGGACCGTGACCTACGGCGGCTACTCCGACTGTATGGTCGCCGATGAGCATTTCATCGTTCGCATTCCCGACGGAATGCCTCTGCACGCCGGGGCTCCGCTTCTCTGTGCCGGTATCACGGTGTACAGCCCCTTGAAATACTTCGGACTTGACAAGCCTGGTATGCACATTGGCGTGGTTGGCCTCGGCGGGCTTGGCCATGTCGCTGTCAAATTTGCCAAGGCCTTTGGCACCAAGGTTACTGTGATTAGTACCTCTCCTAACAAAAAGAATGAGGCTATTGAAAATCTTGGGGCTGATTCATTCTTGGTCAGCCGTGATCAAGAGGCAATGCAGGCTGCTAGTGGGACGTTTGATGGTATCATTGACACGGTCTCTGCTGAACATCCCCTTCTTCCTCTGTTGTCACTTGTCAAAACACATGGAAAGTTTGTTATGGTTGGTGTACCAGAGAAGCCACTCGAGCTGCCAGCCTTTGCTCTTATTGGAGGGAGGAAAACAATGGCTGGTAGTTGCATTGGAGGGATGAAGGAAACGCAGGAGATGATTGATTTTGCAGCCAAACACAATATAACTGCGGATGTCGAGGTGATTCCGATCACCGACATCAACACCGCTATGGAACGGTTGCTCAAACAAGATGTCAAGTATCGATTCGTCATCGACATTGCCAAGACATTGAAAGCCTAA | 1080 | 49.17 | MGKSLDQDHSKNAFGWAATDTSGVLSPFHFSRRETGEKDVALKVLYCGICHSDLHMVKNEWRNAIYPIVPGHEIVGEVTEVGSKVEKFKVGDRVGVGCIVGSCRSCDECSNHLENYCPKLILTYNSRLSDGTVTYGGYSDCMVADEHFIVRIPDGMPLHAGAPLLCAGITVYSPLKYFGLDKPGMHIGVVGLGGLGHVAVKFAKAFGTKVTVISTSPNKKNEAIENLGADSFLVSRDQEAMQAASGTFDGIIDTVSAEHPLLPLLSLVKTHGKFVMVGVPEKPLELPAFALIGGRKTMAGSCIGGMKETQEMIDFAAKHNITADVEVIPITDINTAMERLLKQDVKYRFVIDIAKTLKA | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 48760825 | 48763563 | - | Lag0013253.1 | Lac1g2761 | 596332 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g2761 | 359 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 71 | 85 | IPR002328 | GO:0008270(InterPro)|GO:0016491(InterPro) | |
| Lac1g2761 | 359 | PANTHER | ALDEHYDE REDUCTASE | 7 | 355 | IPR047109 | GO:0009809(PANTHER)|GO:0016616(PANTHER)|GO:0016616(InterPro)|GO:0045551(PANTHER) | |
| Lac1g2761 | 359 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 156 | 321 | IPR036291 | - | |
| Lac1g2761 | 359 | SMART | PKS_ER_names_mod | 23 | 351 | IPR020843 | GO:0016491(InterPro) | |
| Lac1g2761 | 359 | Pfam | Zinc-binding dehydrogenase | 194 | 317 | IPR013149 | - | |
| Lac1g2761 | 359 | SUPERFAMILY | GroES-like | 19 | 184 | IPR011032 | - | |
| Lac1g2761 | 359 | FunFam | Cinnamyl alcohol dehydrogenase | 167 | 323 | - | - | |
| Lac1g2761 | 359 | Pfam | Alcohol dehydrogenase GroES-like domain | 36 | 154 | IPR013154 | - | |
| Lac1g2761 | 359 | Gene3D | - | 167 | 323 | - | - | |
| Lac1g2761 | 359 | CDD | CAD1 | 14 | 352 | IPR047109 | GO:0016616(InterPro) | |
| Lac1g2761 | 359 | FunFam | Uncharacterized protein | 16 | 166 | - | - | |
| Lac1g2761 | 359 | Gene3D | - | 16 | 353 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g1844 | Lac-Chr11:33161640 | Lac1g2761 | Lac-Chr1:48760825 | 5.10E-100 | dispersed | |
| Lac12g0210 | Lac-Chr12:2340590 | Lac1g2761 | Lac-Chr1:48760825 | 3.80E-103 | dispersed | |
| Lac1g2761 | Lac-Chr1:48760825 | Lac2g0127 | Lac-Chr2:960842 | 3.20E-118 | dispersed | |
| Lac1g2761 | Lac-Chr1:48760825 | Lac9g0322 | Lac-Chr9:5203641 | 1.40E-129 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac1g2761 | K23232 | - | csv:101222715 | 639.417 |