Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2765 ATGGGAACTCAAAGTCAAACAGGATTAATAGCACAAAAGAAGATGCTTCCTCCTCAACCTGGAAGATTTGAAGATCGTGAAGAACTCATTAAATATGTCCGTGATTTTGGTGCTGATCAAGGATATGTGGTAACAATTAAGAAGTCTAGGAAAGATAGAAGGGTCATCCTTGGTTGCGATAGAGGAGGTGTGTACCGTAACAGGCGTAAGATCGATGAGAGTCGGCGCAAAAGGAAAGCAAGCTCACGCTTGATAAATTGCCCATTTGAAGCAATTGGCAAGAAGGAAGATGATGCCTGGATGCTTACCATTAAAAATGGGGACCATAACCATGAGGCCTTAAAAGACATGTCAGAGCATCCATACAGTCGCCGTTTTACTGAGGACGAAGTAAGACAAATAAAACAGATGACTGAAGCTGGTATAAAACCACGTCAGGTCCTTAAAGCTCTCAAGCAACACAATCCAGATCTGCAGTCAACACCAAGGCATTTGTACAACCTCAAAGCCAAAATACGCCAAGGAAATCTATCAGAAAAAAATTTCAAGTCATGGAGACCTAATATTTCACTTCCTGCAAATAGTAGTCACACTGTCATTGGGGATTCAGTCAAGCAAAAGTATCGGCTGAAGGTTCCTAATTTAATTGGAGGGGAATTTTTGGATTCGTGCAACTGTCCAGTGGTTGATGTTATTAATCCAGCAACACAAGAAGTTGTTTCTCAAGTTCCTTTAACAACCTATGAGGAGTTTAAGGCTGCAGTTAATGCAGCCAAACAAGCTTTTCCCTCATGGAAAAAAACACCAATTTCTACTCGTCAACATATTTTGTTCAAATTCCAGGAGCTCATCCTCAGGGACATGGATAAGCTTGTGATGAATATTGTCACAGAACAGGGCAAAACATTAAAGGATGCTCAAGATGATATCCTCTATGGTTTAGAGGTGGTTAAACATGCTTGTGGATTGGCCACTATGCAAATGGGGGAATTCATCCCTAATGCATCTGATGGAATTGATTCCTACTGCATCCGAGAACCAATAGGTGTTTGTGCTGGGATATGCTCTTTTAACCATCCAGCAACAATTTCCTTATGGCCTTATTTGATATGGCTTGGTGTGGAATGA 1128 41.05 MGTQSQTGLIAQKKMLPPQPGRFEDREELIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDESRRKRKASSRLINCPFEAIGKKEDDAWMLTIKNGDHNHEALKDMSEHPYSRRFTEDEVRQIKQMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSEKNFKSWRPNISLPANSSHTVIGDSVKQKYRLKVPNLIGGEFLDSCNCPVVDVINPATQEVVSQVPLTTYEEFKAAVNAAKQAFPSWKKTPISTRQHILFKFQELILRDMDKLVMNIVTEQGKTLKDAQDDILYGLEVVKHACGLATMQMGEFIPNASDGIDSYCIREPIGVCAGICSFNHPATISLWPYLIWLGVE 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48802196 48804381 + Lag0013257.1 Lac1g2765 596336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2765 375 Pfam Aldehyde dehydrogenase family 228 367 IPR015590 GO:0016491(InterPro)
Lac1g2765 375 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 206 372 IPR016162 GO:0016491(InterPro)
Lac1g2765 375 Pfam Transcription factor AFT 23 112 IPR014842 GO:0000981(InterPro)|GO:0010106(InterPro)|GO:0045944(InterPro)
Lac1g2765 375 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 15 368 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Lac1g2765 375 SUPERFAMILY ALDH-like 205 372 IPR016161 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2765 Lac-Chr1:48802196 Lac3g1139 Lac-Chr3:9608528 5.90E-22 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23332 PF00171 Aldedh 3.90E-35 CL0099 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2765 K00140 - csv:101207178 675.241