Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2765 ATGGGAACTCAAAGTCAAACAGGATTAATAGCACAAAAGAAGATGCTTCCTCCTCAACCTGGAAGATTTGAAGATCGTGAAGAACTCATTAAATATGTCCGTGATTTTGGTGCTGATCAAGGATATGTGGTAACAATTAAGAAGTCTAGGAAAGATAGAAGGGTCATCCTTGGTTGCGATAGAGGAGGTGTGTACCGTAACAGGCGTAAGATCGATGAGAGTCGGCGCAAAAGGAAAGCAAGCTCACGCTTGATAAATTGCCCATTTGAAGCAATTGGCAAGAAGGAAGATGATGCCTGGATGCTTACCATTAAAAATGGGGACCATAACCATGAGGCCTTAAAAGACATGTCAGAGCATCCATACAGTCGCCGTTTTACTGAGGACGAAGTAAGACAAATAAAACAGATGACTGAAGCTGGTATAAAACCACGTCAGGTCCTTAAAGCTCTCAAGCAACACAATCCAGATCTGCAGTCAACACCAAGGCATTTGTACAACCTCAAAGCCAAAATACGCCAAGGAAATCTATCAGAAAAAAATTTCAAGTCATGGAGACCTAATATTTCACTTCCTGCAAATAGTAGTCACACTGTCATTGGGGATTCAGTCAAGCAAAAGTATCGGCTGAAGGTTCCTAATTTAATTGGAGGGGAATTTTTGGATTCGTGCAACTGTCCAGTGGTTGATGTTATTAATCCAGCAACACAAGAAGTTGTTTCTCAAGTTCCTTTAACAACCTATGAGGAGTTTAAGGCTGCAGTTAATGCAGCCAAACAAGCTTTTCCCTCATGGAAAAAAACACCAATTTCTACTCGTCAACATATTTTGTTCAAATTCCAGGAGCTCATCCTCAGGGACATGGATAAGCTTGTGATGAATATTGTCACAGAACAGGGCAAAACATTAAAGGATGCTCAAGATGATATCCTCTATGGTTTAGAGGTGGTTAAACATGCTTGTGGATTGGCCACTATGCAAATGGGGGAATTCATCCCTAATGCATCTGATGGAATTGATTCCTACTGCATCCGAGAACCAATAGGTGTTTGTGCTGGGATATGCTCTTTTAACCATCCAGCAACAATTTCCTTATGGCCTTATTTGATATGGCTTGGTGTGGAATGA 1128 41.05 MGTQSQTGLIAQKKMLPPQPGRFEDREELIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDESRRKRKASSRLINCPFEAIGKKEDDAWMLTIKNGDHNHEALKDMSEHPYSRRFTEDEVRQIKQMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSEKNFKSWRPNISLPANSSHTVIGDSVKQKYRLKVPNLIGGEFLDSCNCPVVDVINPATQEVVSQVPLTTYEEFKAAVNAAKQAFPSWKKTPISTRQHILFKFQELILRDMDKLVMNIVTEQGKTLKDAQDDILYGLEVVKHACGLATMQMGEFIPNASDGIDSYCIREPIGVCAGICSFNHPATISLWPYLIWLGVE 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48802196 48804381 + Lag0013257.1 Lac1g2765 596336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2765 375 Pfam Aldehyde dehydrogenase family 228 367 IPR015590 GO:0016491(InterPro)
Lac1g2765 375 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 206 372 IPR016162 GO:0016491(InterPro)
Lac1g2765 375 Pfam Transcription factor AFT 23 112 IPR014842 GO:0000981(InterPro)|GO:0010106(InterPro)|GO:0045944(InterPro)
Lac1g2765 375 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 15 368 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Lac1g2765 375 SUPERFAMILY ALDH-like 205 372 IPR016161 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2765 K00140 - - csv:101207178 675.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2765 Lac-Chr1:48802196 Lac3g1139 Lac-Chr3:9608528 5.90E-22 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g0889 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 72.4 2.0e-214 742.7
Lac6g1384 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 4.3e-161 565.5
Lac3g0696 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 4.6e-155 545.4
Lac3g0696 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 78.7 1.2e-257 886.3
Lac6g1384 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 76.8 2.0e-249 859.0
Lac3g0889 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.7 6.4e-163 571.6
Lac6g1384 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 77.9 8.3e-171 597.4
Lac3g0696 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 73.6 3.0e-168 589.0
Lac3g0889 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.3 2.5e-103 373.2
Lac2g0944 . 108 581 Aldehyde Dehydrogenase Gene Family AT4G34240 65.8 6.2e-182 634.8
Lac2g0944 . 169 581 Aldehyde Dehydrogenase Gene Family AT1G44170 73.6 7.0e-181 630.9
Lac5g2068 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 52.0 3.4e-119 426.0
Lac9g2833 . 65 481 Aldehyde Dehydrogenase Gene Family AT1G44170 51.3 1.4e-117 420.6
Lac5g2068 . 1 477 Aldehyde Dehydrogenase Gene Family AT4G36250 64.2 5.2e-188 654.8
Lac9g2833 . 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 55.5 1.6e-157 553.5
Lac9g2296 . 36 509 Aldehyde Dehydrogenase Gene Family AT1G79440 71.1 9.9e-209 723.8
Lac12g0096 . 1 503 Aldehyde Dehydrogenase Gene Family AT2G14170 80.9 4.4e-237 818.1
Lac1g2767 . 8 315 Aldehyde Dehydrogenase Gene Family AT2G14170 59.4 5.4e-102 369.4
Lac1g2765 . 177 368 Aldehyde Dehydrogenase Gene Family AT2G14170 60.6 1.1e-62 238.8
Lac3g0667 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.0 1.2e-251 866.3
Lac3g0667 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 82.3 1.1e-257 886.3
Lac6g2850 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.1 2.2e-266 915.2
Lac10g0368 . 101 615 Aldehyde Dehydrogenase Gene Family AT5G62530 80.4 2.1e-257 885.6
Lac11g0932 . 1510 1929 Aldehyde Dehydrogenase Gene Family AT3G66658 76.0 2.4e-195 679.5
Lac11g0932 . 34 204 Aldehyde Dehydrogenase Gene Family AT3G66658 80.1 6.6e-76 282.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010728 0 5 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 2 1 1 1 3 1 0 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23332 PF00171 Aldedh 3.90E-35 CL0099 Lac TF