Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2779 ATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTCACCTTCTCCAAGCGCCGGAGGGGACTTTTCAAGAAAGCCAAAGAGCTATCCGTTCTATGCGATGCCGATGTCGCCCTCATTATCTTCTCCACCACCGGAAAGCTCTTTGAGTACTCCAGCTCAAGCATGAAGGGAATTATAGAAAGACATAATTTGCACTCCAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGCTGGTTGAAAACAGCAACTACACCCGATTGAACAAGGAAATTGCAGAGAAAACTCATCAACTAAGGCAGATGAGGGGAGAAGAGCTCCAAACATTGAATATAGAGGAACTGCAGCAGCTAGAGAAGTCACTGGAGTCTGGATTGAGCCGTGTGATGGAGAAAAAGGGCGAGCGGATCATGAAAGAGATCACTGATCTTCAAAGAAAGTCTGCGGAGTTGATAGAAGAGAATAAGCGACTGAAACAACAAGCGGAGAAGATGAATGGCGTAAGGCATATCGGCGTGGAGCCCGAGATTTTGGTTGTGGAGGATGGGCAGTCATCGAACTCCGTCACTGAAGCTTGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGATTGGTCGAGATTTACATGGGTCGAGTTGTCGTTTATCCAATGGTTGCAGTCTGCCGTATTCCGGGTGATGGTGATGGTGATGGTGATGGATCAAGAAGATGA 771 47.73 MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELIEENKRLKQQAEKMNGVRHIGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLGLVEIYMGRVVVYPMVAVCRIPGDGDGDGDGSRR 256
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 48892149 48896399 - Lag0013271.1 Lac1g2779 596350
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2779 256 Coils Coil 94 114 - -
Lac1g2779 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g2779 256 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac1g2779 256 FunFam Transcription factor, MADS-box 13 83 - -
Lac1g2779 256 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac1g2779 256 Coils Coil 143 177 - -
Lac1g2779 256 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g2779 256 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g2779 256 Pfam K-box region 91 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac1g2779 256 Coils Coil 121 141 - -
Lac1g2779 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g2779 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac1g2779 256 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g2779 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g2779 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g2779 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0077 Lac-Chr12:893254 Lac1g2779 Lac-Chr1:48892149 7.80E-19 dispersed
Lac1g2779 Lac-Chr1:48892149 Lac6g1007 Lac-Chr6:9213162 3.60E-31 dispersed
Lac1g2779 Lac-Chr1:48892149 Lac6g1006 Lac-Chr6:9209807 9.30E-19 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23333 PF01486 K-box 5.90E-16 No_clan Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2779 - - - 0.0