Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g2779 | ATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTCACCTTCTCCAAGCGCCGGAGGGGACTTTTCAAGAAAGCCAAAGAGCTATCCGTTCTATGCGATGCCGATGTCGCCCTCATTATCTTCTCCACCACCGGAAAGCTCTTTGAGTACTCCAGCTCAAGCATGAAGGGAATTATAGAAAGACATAATTTGCACTCCAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGCTGGTTGAAAACAGCAACTACACCCGATTGAACAAGGAAATTGCAGAGAAAACTCATCAACTAAGGCAGATGAGGGGAGAAGAGCTCCAAACATTGAATATAGAGGAACTGCAGCAGCTAGAGAAGTCACTGGAGTCTGGATTGAGCCGTGTGATGGAGAAAAAGGGCGAGCGGATCATGAAAGAGATCACTGATCTTCAAAGAAAGTCTGCGGAGTTGATAGAAGAGAATAAGCGACTGAAACAACAAGCGGAGAAGATGAATGGCGTAAGGCATATCGGCGTGGAGCCCGAGATTTTGGTTGTGGAGGATGGGCAGTCATCGAACTCCGTCACTGAAGCTTGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGATTGGTCGAGATTTACATGGGTCGAGTTGTCGTTTATCCAATGGTTGCAGTCTGCCGTATTCCGGGTGATGGTGATGGTGATGGTGATGGATCAAGAAGATGA | 771 | 47.73 | MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELIEENKRLKQQAEKMNGVRHIGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLGLVEIYMGRVVVYPMVAVCRIPGDGDGDGDGSRR | 256 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 48892149 | 48896399 | - | Lag0013271.1 | Lac1g2779 | 596350 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g2779 | 256 | Coils | Coil | 94 | 114 | - | - | |
| Lac1g2779 | 256 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac1g2779 | 256 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Lac1g2779 | 256 | FunFam | Transcription factor, MADS-box | 13 | 83 | - | - | |
| Lac1g2779 | 256 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Lac1g2779 | 256 | Coils | Coil | 143 | 177 | - | - | |
| Lac1g2779 | 256 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac1g2779 | 256 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac1g2779 | 256 | Pfam | K-box region | 91 | 171 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Lac1g2779 | 256 | Coils | Coil | 121 | 141 | - | - | |
| Lac1g2779 | 256 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac1g2779 | 256 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 194 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lac1g2779 | 256 | SUPERFAMILY | SRF-like | 3 | 85 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac1g2779 | 256 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac1g2779 | 256 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac1g2779 | 256 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g0077 | Lac-Chr12:893254 | Lac1g2779 | Lac-Chr1:48892149 | 7.80E-19 | dispersed | |
| Lac1g2779 | Lac-Chr1:48892149 | Lac6g1007 | Lac-Chr6:9213162 | 3.60E-31 | dispersed | |
| Lac1g2779 | Lac-Chr1:48892149 | Lac6g1006 | Lac-Chr6:9209807 | 9.30E-19 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23333 | PF01486 | K-box | 5.90E-16 | No_clan | Lac | TF |
Pathway information