Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2790 ATGGCGGATAGTTTTTACTGTACAGAGAATGCCAATACTTGTTTTGATGAATTTGATTGTAATGCCACAAATAATGAGTTTGAGCGATGCTCAATCTCTCTGCCCCACCGAAGAATCCGAGACCCGAATGTTGACTGTTTCGGATCCGGGAATTTGATGGGCTCTGTGATTGAGAGTGAAGAGAGGATTAAGGGAATGGTTGAGAAGGAGATTGAGCATTTGCCTAGACATGATTATCTTAAGAGAATGCGCTGTGGGGATTTGGATTTGAAGTTTAGGAGAGAGGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTTTGAGTCTTTGTCTATCTATGAACTACTTGGACCGTTTCCTCTCAGTATATCACATGCCTATGGATAAAAGCTGGACTGTGCAGCTGCTGTCAGTAGCTTGTGTGTCTCTAGCAGCAAAGATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCCAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTCTGGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATCACTGTTGAGCAGCAAGTACCGAGCCTATCCTTTTCAAAATCTGCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAAGCCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCAGGAGAATTGCAAGAACCAGACATTAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAGAGAGTGATGAATTGTGTTGAACTGATCAGAGATTTGTCATTGATTAATAATGTTTATGGAAATGCATTGGTTGGTAATGGTGGGGGCTCAGTTCCTCAGAGCCCTGTTGGAGTGTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTAACTGCAGGGTCATGTGGTAATTCTTCTTCTTCTTCTTCTCATGACAGTCCAGACAGTAAGAGGAGGAGACAAGACAGACCATCATCAAAACATGATTCAAGTCCATCCAGTCCTGTCAAATGA 1095 41.55 MADSFYCTENANTCFDEFDCNATNNEFERCSISLPHRRIRDPNVDCFGSGNLMGSVIESEERIKGMVEKEIEHLPRHDYLKRMRCGDLDLKFRREAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHMPMDKSWTVQLLSVACVSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQQVPSLSFSKSAQLILSTIKGIDFLEFKPSEIALAVAISISGELQEPDINKAILSFPYMEKERVMNCVELIRDLSLINNVYGNALVGNGGGSVPQSPVGVLDAACLSYKTEELTAGSCGNSSSSSSHDSPDSKRRRQDRPSSKHDSSPSSPVK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48993907 48995766 + Lag0013282.1 Lac1g2790 596361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2790 364 FunFam D2/4-type cyclin 76 188 - -
Lac1g2790 364 MobiDBLite consensus disorder prediction 339 354 - -
Lac1g2790 364 SUPERFAMILY Cyclin-like 177 296 IPR036915 -
Lac1g2790 364 CDD CYCLIN_AtCycD-like_rpt1 93 190 - -
Lac1g2790 364 Gene3D - 65 281 - -
Lac1g2790 364 Pfam Cyclin, N-terminal domain 64 192 IPR006671 -
Lac1g2790 364 Pfam Cyclin, C-terminal domain 195 286 IPR004367 -
Lac1g2790 364 MobiDBLite consensus disorder prediction 325 364 - -
Lac1g2790 364 CDD CYCLIN_AtCycD-like_rpt2 195 282 - -
Lac1g2790 364 FunFam D6-type cyclin 189 280 - -
Lac1g2790 364 Gene3D - 76 193 - -
Lac1g2790 364 SMART Cyclin_C_2 195 340 IPR004367 -
Lac1g2790 364 SUPERFAMILY Cyclin-like 55 192 IPR036915 -
Lac1g2790 364 PANTHER CYCLINS 63 285 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lac1g2790 364 SMART cyclin_7 98 186 IPR013763 -
Lac1g2790 364 ProSitePatterns Cyclins signature. 93 124 IPR048258 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2790 Lac-Chr1:48993907 Lac6g0985 Lac-Chr6:8916746 1.90E-81 dispersed
Lac1g2790 Lac-Chr1:48993907 Lac6g0031 Lac-Chr6:306800 2.40E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2790 K18810 - csv:101209378 578.556