Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2819 ATGAATCCTCCCACTTTCCCCATGGAATTTTCCGGCGACCCACTTCCGACCACTTTCACCGGAAACGCCCACCCGCGGATTCCGTTGCAAAACCTCTCAACGATCCGTTCCCGAATGGACGCCGTCCAAATCTTCCTATCCGACAACATCGACAGAGAAACTCGCATCAGCAATCAGCAGATGGATGCAGTTTCGTCTGAAATCGCCACGGCAATCCAACAGATCATCGTCAACGGCGCCGCTCTTCTAGCCTGCTCCCAAGTGAAAACCCCGAATACGCCGGATTTGACGGCCTCGACGACTCGAACTCATCCGAGTCCTGTGGCAGAGAAATCAATTGCGGAGCTGAAGGTCGAGGCTGCAGATGAGATTACGAGAGCCGAATCGGAGGAATTTGACCCGGATTGTGAGATCGTGGAGCTGGATGCGATGGAATTGCTAGCGGAGCACATCCATTTCTGCGAAATCTGCGGGAAAGGGTTCAAGCGCGATGCGAATTTGCGGATGCATATGCGGGCCCATGGGAATCAATTCAAGACTCCAGAGGCGTTGGCGAAGCCGTTGGATGTCGTTGCTGCGGACCAAAGGGCGAAGCGCACGCGGTTTTCGTGCCCTTACGACGGCTGTGTAAGGAACAAAACGCACAACAAGTTCAGGCCTCTGAAATCGTTGATTTGCGTCAAGAATCACTTCAAGCGGAGCCACTGCCCCAAGATGTTCTCCTGCAATCGCTGCAACAAGAAGAGCTTCTCTGTAATGGCGGACTTGAAGAGCCACTTGAAGCACTGCGGCGAGTCCAAGTGGCGATGTTCGTGTGGGACGACCTTTTCCCGCAAGGACAAGTTGTTTGGTCATATGGCGCTGTTCGAAGGCCACATGCCGGCGGTGGCGGACGACGACGACGGGAAGGGGAAACTTACGGCGGCGACGCCGGAGTTGGATGAAGATGGGGACTGTAGTCGGATTTCGAAGGACGTCAATATCCCAAACGCTTCAAATGGATCGGATGATGGATCTTTCGAATCGTTTCTTGATGGGTTTGGTTCGATTGAGAATCACTGTCTGCAAGAGGTGCTGGGATTCCCGTATAATTTCGATTCGGAATCCGAATGGAAATTTTGTGGTTTTTGA 1131 52.96 MNPPTFPMEFSGDPLPTTFTGNAHPRIPLQNLSTIRSRMDAVQIFLSDNIDRETRISNQQMDAVSSEIATAIQQIIVNGAALLACSQVKTPNTPDLTASTTRTHPSPVAEKSIAELKVEAADEITRAESEEFDPDCEIVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDVVAADQRAKRTRFSCPYDGCVRNKTHNKFRPLKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVADDDDGKGKLTAATPELDEDGDCSRISKDVNIPNASNGSDDGSFESFLDGFGSIENHCLQEVLGFPYNFDSESEWKFCGF 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49248936 49250066 - Lag0013311.1 Lac1g2819 596390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2819 376 SUPERFAMILY beta-beta-alpha zinc fingers 149 175 IPR036236 -
Lac1g2819 376 Gene3D Classic Zinc Finger 152 175 - -
Lac1g2819 376 SMART c2h2final6 240 262 IPR013087 -
Lac1g2819 376 SMART c2h2final6 152 174 IPR013087 -
Lac1g2819 376 SMART c2h2final6 202 235 IPR013087 -
Lac1g2819 376 SMART c2h2final6 268 292 IPR013087 -
Lac1g2819 376 FunFam Zinc finger 45-like 149 175 - -
Lac1g2819 376 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 22 318 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Lac1g2819 376 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Lac1g2819 376 Gene3D Classic Zinc Finger 228 297 - -
Lac1g2819 376 Pfam Zinc finger, C2H2 type 152 174 IPR013087 -
Lac1g2819 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2819 Lac-Chr1:49248936 Lac2g2022 Lac-Chr2:22621207 4.80E-64 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23337 PF00096 zf-C2H2 0.00016 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2819 - - - 0.0