Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2819 | ATGAATCCTCCCACTTTCCCCATGGAATTTTCCGGCGACCCACTTCCGACCACTTTCACCGGAAACGCCCACCCGCGGATTCCGTTGCAAAACCTCTCAACGATCCGTTCCCGAATGGACGCCGTCCAAATCTTCCTATCCGACAACATCGACAGAGAAACTCGCATCAGCAATCAGCAGATGGATGCAGTTTCGTCTGAAATCGCCACGGCAATCCAACAGATCATCGTCAACGGCGCCGCTCTTCTAGCCTGCTCCCAAGTGAAAACCCCGAATACGCCGGATTTGACGGCCTCGACGACTCGAACTCATCCGAGTCCTGTGGCAGAGAAATCAATTGCGGAGCTGAAGGTCGAGGCTGCAGATGAGATTACGAGAGCCGAATCGGAGGAATTTGACCCGGATTGTGAGATCGTGGAGCTGGATGCGATGGAATTGCTAGCGGAGCACATCCATTTCTGCGAAATCTGCGGGAAAGGGTTCAAGCGCGATGCGAATTTGCGGATGCATATGCGGGCCCATGGGAATCAATTCAAGACTCCAGAGGCGTTGGCGAAGCCGTTGGATGTCGTTGCTGCGGACCAAAGGGCGAAGCGCACGCGGTTTTCGTGCCCTTACGACGGCTGTGTAAGGAACAAAACGCACAACAAGTTCAGGCCTCTGAAATCGTTGATTTGCGTCAAGAATCACTTCAAGCGGAGCCACTGCCCCAAGATGTTCTCCTGCAATCGCTGCAACAAGAAGAGCTTCTCTGTAATGGCGGACTTGAAGAGCCACTTGAAGCACTGCGGCGAGTCCAAGTGGCGATGTTCGTGTGGGACGACCTTTTCCCGCAAGGACAAGTTGTTTGGTCATATGGCGCTGTTCGAAGGCCACATGCCGGCGGTGGCGGACGACGACGACGGGAAGGGGAAACTTACGGCGGCGACGCCGGAGTTGGATGAAGATGGGGACTGTAGTCGGATTTCGAAGGACGTCAATATCCCAAACGCTTCAAATGGATCGGATGATGGATCTTTCGAATCGTTTCTTGATGGGTTTGGTTCGATTGAGAATCACTGTCTGCAAGAGGTGCTGGGATTCCCGTATAATTTCGATTCGGAATCCGAATGGAAATTTTGTGGTTTTTGA | 1131 | 52.96 | MNPPTFPMEFSGDPLPTTFTGNAHPRIPLQNLSTIRSRMDAVQIFLSDNIDRETRISNQQMDAVSSEIATAIQQIIVNGAALLACSQVKTPNTPDLTASTTRTHPSPVAEKSIAELKVEAADEITRAESEEFDPDCEIVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDVVAADQRAKRTRFSCPYDGCVRNKTHNKFRPLKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVADDDDGKGKLTAATPELDEDGDCSRISKDVNIPNASNGSDDGSFESFLDGFGSIENHCLQEVLGFPYNFDSESEWKFCGF | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 49248936 | 49250066 | - | Lag0013311.1 | Lac1g2819 | 596390 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2819 | 376 | SUPERFAMILY | beta-beta-alpha zinc fingers | 149 | 175 | IPR036236 | - | |
Lac1g2819 | 376 | Gene3D | Classic Zinc Finger | 152 | 175 | - | - | |
Lac1g2819 | 376 | SMART | c2h2final6 | 240 | 262 | IPR013087 | - | |
Lac1g2819 | 376 | SMART | c2h2final6 | 152 | 174 | IPR013087 | - | |
Lac1g2819 | 376 | SMART | c2h2final6 | 202 | 235 | IPR013087 | - | |
Lac1g2819 | 376 | SMART | c2h2final6 | 268 | 292 | IPR013087 | - | |
Lac1g2819 | 376 | FunFam | Zinc finger 45-like | 149 | 175 | - | - | |
Lac1g2819 | 376 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 22 | 318 | IPR044300 | GO:0010044(InterPro)|GO:0010447(InterPro) | |
Lac1g2819 | 376 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 154 | 174 | IPR013087 | - | |
Lac1g2819 | 376 | Gene3D | Classic Zinc Finger | 228 | 297 | - | - | |
Lac1g2819 | 376 | Pfam | Zinc finger, C2H2 type | 152 | 174 | IPR013087 | - | |
Lac1g2819 | 376 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 152 | 179 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2819 | Lac-Chr1:49248936 | Lac2g2022 | Lac-Chr2:22621207 | 4.80E-64 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23337 | PF00096 | zf-C2H2 | 0.00016 | CL0361 | Lac | TF |
Pathway information
