Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2862 ATGGCGGGTCAACCGTCAGATTCTTCCCCTCTTATTCCTCCGGCTCCGATCAGCGACCCCAGTGAGATCGACCTCGAAGCCGGCCAAGGGGAGCAAATTCAGTGTAGAATCTGTCTCGAGACCGATGGTAGGGATTTTATTGCTCCTTGCAAATGCAAAGGGACATCGAAGTATGTTCATCGAGAATGTCTGGATCATTGGCGAGCTGTGAAGGAAGGGTTTGCTTTTGCTCATTGTACCACCTGCAAGGCCCCTTATCATTTGAGAGTGCATGCTGTCGCGGATAGGAAATGGCGAACCCTGAAATTTCGATTTTTTGTGACTAGAGACATTATATTTATATTTTTGGCGGTTCAGCTTGTAATTGCTTCTCTGGGATATTTGATGTATTTTATAGATGGTTGTCAACATTACTGGCTTCGTCTTACTTGGGGTTTCGATAACAAAATTAGTTTTTATTACATATGTGGAGCTTTATTATTTTTTGCTTTGCTCGGCTTATCTGGATGCTTCATCACTTGTTATGATCGGAGAGTTAGGAATGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGCTGTCACCCTGGACTATGTGCAGACTGTCATTTACCTGGTACTCTTTGCATGTGGACTGACTGTACCACTTGCTTCGAAAGTTGTGGAAGCATAGCAACCGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGATTGCCATTATTATTTATAATGGCCTTGATCGTTCTTGGTTTGTTTACAGTGATTGGGATATTCTACAGTGTCTTGGTGGCCACCATGGTTGGACAACGAATATGGCAACGACACTATCACATACTTGCAAAAAGAATGTTAACAAAGTGCATCATGGGTGAAGGTGGATGCCCTTCAGCCGGCCAAGCACATTCATTCACGAGGTTTTTGCTTTCTCAGGAATATGTTGTGGAAGATGTAGATGGCGAGATGACAGGATCTGACTGGTTACCTCCACCACTTCCGGCAGAGCACGTTCAACAGCTGAAAACTCTTGGCCTTCTATGA 1044 44.35 MAGQPSDSSPLIPPAPISDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHAVADRKWRTLKFRFFVTRDIIFIFLAVQLVIASLGYLMYFIDGCQHYWLRLTWGFDNKISFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKCIMGEGGCPSAGQAHSFTRFLLSQEYVVEDVDGEMTGSDWLPPPLPAEHVQQLKTLGLL 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49602098 49606202 - Lag0013354.1 Lac1g2862 596433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2862 347 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 346 - -
Lac1g2862 347 CDD RING_CH-C4HC3_MARCH 35 83 - -
Lac1g2862 347 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270(InterPro)
Lac1g2862 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 95 IPR013083 -
Lac1g2862 347 Pfam RING-variant domain 35 82 IPR011016 GO:0008270(InterPro)
Lac1g2862 347 SUPERFAMILY RING/U-box 31 87 - -
Lac1g2862 347 SMART ringv_2 34 83 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2862 Lac-Chr1:49602098 Lac3g0845 Lac-Chr3:6780656 1.60E-53 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2862 - - - 0.0