Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2882 ATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAGGAAAGGGAGAACAATAAGAGGAGGGAGAGACGGCGGAGGGCCATTGCTGCTAAGATCTACACTGGCCTCCGAGCTCAGGGGAACTATAAGCTCCCCAAGCACTGTGACAACAACGAGGTCTTGAAGGCGCTCTGTAATGAAGCTGGTTGGGTGGTTGAAGAAGATGGCACCACTTATCGCAAGGGATGTCAGCCACCTCCGATTGATATCGGCACTTCTGCAAACATGAGTGCCTGTTCCTCTCTTCAACCAAGCCCACAATCTTCATGCTTCCCAAGTCCTGTACCATCCTACCATGCCAGCCCTTCTTCATCCTCTTTTCCGAGCCCAACTCGATTTGATGGGAATCCATCTTCTTATCTTTTGCCATTCCTTCAAAATATAACCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCAAACAGTGCACCTGTTACACCACCTCTTTCTTCCCCAACATCAAGAGGTTCGAAGCGAAAGCCCGACTGGGAGTCCATTCCGAATAGCTATGTAACGTCTTTCCGCCATCCTCTCTTTGCTGTCTCTGCTCCTTCAAGTCCTACAAGATGCCACCATCTTACACCAGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTGGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTAGCACCTTCTGTGGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTGAGTCAGCAGAACTCTCTCCAGGATGCAGTTGACAGACATGGAGCAATGGGCTGGAGTGCTGCATCTGATAGGGGACGAGGCACTGAGTTTGAATTTGAGAAATTTGAGAGTGGAAAAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGATGATTTGGAGCTTACACTTGGGAGTGGAAAGGCCCGTGGTTAG 960 50.0 MTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCQPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNITSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWSAASDRGRGTEFEFEKFESGKVKPWEGERIHEVGVDDLELTLGSGKARG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49746057 49747575 + Lag0013374.1 Lac1g2882 596453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2882 319 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 129 IPR008540 -
Lac1g2882 319 MobiDBLite consensus disorder prediction 1 25 - -
Lac1g2882 319 MobiDBLite consensus disorder prediction 10 24 - -
Lac1g2882 319 MobiDBLite consensus disorder prediction 156 171 - -
Lac1g2882 319 MobiDBLite consensus disorder prediction 156 179 - -
Lac1g2882 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 6 318 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2882 Lac-Chr1:49746057 Lac6g0390 Lac-Chr6:3198662 3.60E-89 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23340 PF05687 BES1_N 3.80E-64 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2882 K14503 - csv:101216171 576.63