Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2882 | ATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAGGAAAGGGAGAACAATAAGAGGAGGGAGAGACGGCGGAGGGCCATTGCTGCTAAGATCTACACTGGCCTCCGAGCTCAGGGGAACTATAAGCTCCCCAAGCACTGTGACAACAACGAGGTCTTGAAGGCGCTCTGTAATGAAGCTGGTTGGGTGGTTGAAGAAGATGGCACCACTTATCGCAAGGGATGTCAGCCACCTCCGATTGATATCGGCACTTCTGCAAACATGAGTGCCTGTTCCTCTCTTCAACCAAGCCCACAATCTTCATGCTTCCCAAGTCCTGTACCATCCTACCATGCCAGCCCTTCTTCATCCTCTTTTCCGAGCCCAACTCGATTTGATGGGAATCCATCTTCTTATCTTTTGCCATTCCTTCAAAATATAACCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCAAACAGTGCACCTGTTACACCACCTCTTTCTTCCCCAACATCAAGAGGTTCGAAGCGAAAGCCCGACTGGGAGTCCATTCCGAATAGCTATGTAACGTCTTTCCGCCATCCTCTCTTTGCTGTCTCTGCTCCTTCAAGTCCTACAAGATGCCACCATCTTACACCAGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTGGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTAGCACCTTCTGTGGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTGAGTCAGCAGAACTCTCTCCAGGATGCAGTTGACAGACATGGAGCAATGGGCTGGAGTGCTGCATCTGATAGGGGACGAGGCACTGAGTTTGAATTTGAGAAATTTGAGAGTGGAAAAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGATGATTTGGAGCTTACACTTGGGAGTGGAAAGGCCCGTGGTTAG | 960 | 50.0 | MTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCQPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNITSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWSAASDRGRGTEFEFEKFESGKVKPWEGERIHEVGVDDLELTLGSGKARG | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 49746057 | 49747575 | + | Lag0013374.1 | Lac1g2882 | 596453 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2882 | 319 | Pfam | BES1/BZR1 plant transcription factor, N-terminal | 6 | 129 | IPR008540 | - | |
Lac1g2882 | 319 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Lac1g2882 | 319 | MobiDBLite | consensus disorder prediction | 10 | 24 | - | - | |
Lac1g2882 | 319 | MobiDBLite | consensus disorder prediction | 156 | 171 | - | - | |
Lac1g2882 | 319 | MobiDBLite | consensus disorder prediction | 156 | 179 | - | - | |
Lac1g2882 | 319 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 3-RELATED | 6 | 318 | IPR033264 | GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2882 | Lac-Chr1:49746057 | Lac6g0390 | Lac-Chr6:3198662 | 3.60E-89 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23340 | PF05687 | BES1_N | 3.80E-64 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g2882 | K14503 | - | csv:101216171 | 576.63 |