Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2882 ATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAGGAAAGGGAGAACAATAAGAGGAGGGAGAGACGGCGGAGGGCCATTGCTGCTAAGATCTACACTGGCCTCCGAGCTCAGGGGAACTATAAGCTCCCCAAGCACTGTGACAACAACGAGGTCTTGAAGGCGCTCTGTAATGAAGCTGGTTGGGTGGTTGAAGAAGATGGCACCACTTATCGCAAGGGATGTCAGCCACCTCCGATTGATATCGGCACTTCTGCAAACATGAGTGCCTGTTCCTCTCTTCAACCAAGCCCACAATCTTCATGCTTCCCAAGTCCTGTACCATCCTACCATGCCAGCCCTTCTTCATCCTCTTTTCCGAGCCCAACTCGATTTGATGGGAATCCATCTTCTTATCTTTTGCCATTCCTTCAAAATATAACCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCAAACAGTGCACCTGTTACACCACCTCTTTCTTCCCCAACATCAAGAGGTTCGAAGCGAAAGCCCGACTGGGAGTCCATTCCGAATAGCTATGTAACGTCTTTCCGCCATCCTCTCTTTGCTGTCTCTGCTCCTTCAAGTCCTACAAGATGCCACCATCTTACACCAGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTGGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTAGCACCTTCTGTGGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTGAGTCAGCAGAACTCTCTCCAGGATGCAGTTGACAGACATGGAGCAATGGGCTGGAGTGCTGCATCTGATAGGGGACGAGGCACTGAGTTTGAATTTGAGAAATTTGAGAGTGGAAAAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGATGATTTGGAGCTTACACTTGGGAGTGGAAAGGCCCGTGGTTAG 960 50.0 MTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCQPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNITSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWSAASDRGRGTEFEFEKFESGKVKPWEGERIHEVGVDDLELTLGSGKARG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49746057 49747575 + Lag0013374.1 Lac1g2882 596453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2882 319 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 129 IPR008540 -
Lac1g2882 319 MobiDBLite consensus disorder prediction 1 25 - -
Lac1g2882 319 MobiDBLite consensus disorder prediction 10 24 - -
Lac1g2882 319 MobiDBLite consensus disorder prediction 156 171 - -
Lac1g2882 319 MobiDBLite consensus disorder prediction 156 179 - -
Lac1g2882 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 6 318 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2882 K14503 - - csv:101216171 576.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2882 Lac-Chr1:49746057 Lac6g0390 Lac-Chr6:3198662 3.60E-89 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0390 . 1 311 BZR Transcription Factor Family AT1G75080 60.6 2.9e-89 326.2
Lac1g2882 . 28 319 BZR Transcription Factor Family AT1G75080 58.6 9.5e-80 294.7
Lac6g0390 . 1 312 BZR Transcription Factor Family AT1G19350 59.1 2.1e-87 320.1
Lac1g2882 . 28 317 BZR Transcription Factor Family AT1G19350 58.9 3.4e-77 286.2
Lac1g2882 . 6 319 BZR Transcription Factor Family AT3G50750 57.5 4.7e-77 285.4
Lac6g0390 . 1 311 BZR Transcription Factor Family AT3G50750 50.6 7.3e-62 235.0
Lac5g2412 . 77 325 BZR Transcription Factor Family AT4G18890 52.6 4.9e-50 195.3
Lac10g0987 . 80 328 BZR Transcription Factor Family AT4G18890 52.0 9.2e-49 191.0
Lac5g2412 . 1 325 BZR Transcription Factor Family AT1G78700 73.4 1.4e-117 420.2
Lac10g0987 . 1 328 BZR Transcription Factor Family AT1G78700 68.1 3.5e-103 372.5
Lac1g2882 . 28 200 BZR Transcription Factor Family AT4G36780 78.0 3.7e-63 239.2
Lac6g0390 . 33 204 BZR Transcription Factor Family AT4G36780 59.9 2.6e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23340 PF05687 BES1_N 3.80E-64 No_clan Lac TF