Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g2887 | ATGGGGGATATGATATGTGGGGTTTGGAAAAGCAAAAGGCCGTTAAGTTACACAGTCCGGGGACTCACCATGCTAAAGTGCTTATTGGTCATAGCTTCGTTGATCCTGATCTCCTCCGCCTTTGCACAAGTACCTGACGTCCCTAAAGAAGATGAATGGCTCACTTTGAGAGGACAAGTGCCAATTGTAATAGCAAGAGGTGGGTTATCTGGAGTGTTTCCAGAATCAAGCCCATATGCAAACCAATTGGCATTAGTTTCAAGTTTATCGAGCACAGCTTTGTTCTGTAACGTGCAACTTACAAAAGATGGAGTAGGCATTTGCTTGACTGATCTTAGGCTTCAAAACTCAACCAACATTGAGGAGGTCTTCCCTAGAGCTCAAAAGAGCTACAAAATCAATGGCAAGGTTATCAAAGGATGGTTTTCTGTTGATTACTTGGCTGAGAGTCTCCTTAACAGTGTCGGCATGATTCAAAGTGTCTTGTCCCGACCTAGTATCTTCGATAATACTTTGCCCATTGCTGCCGTTGAAGACATCATCGGAATCAAACCGGGAAAAGTTTGGTTGAACGCAGATCACGAATCATTCTACCAAGAGCACAATCTGAGTGTGACATCATACATTCAAAAGGCATTGGACTTCAGACTGATGCGCGTAAACTTTGTGTCATCTTCTGAGATTGGAATATTGAAAGACCTAAGTGGGAGTGTGAACAATGCCACAACAAAGCTGATCTTCCGAATGTTAGAAGCCAATGAAATAGAGCCAACAACAAGTAAAACATACGGTGCATTGGCTAAAGAACTGGCCATGATAAAGACATTTGCCTCTGGCATTCTCATCCGCAAAGAATTCATTTGGCCAATCGGTAAAGACGGCTATCTGCAGCCTGCAACAAACCTTGTCAAGGATGCTCACAAGCTTGGCTTGGAAGTTTATGCCTCTGGCTTTGCAAACGATGCCATGGCTGGTTACAATTATAGCTATGATCCAATCAGTGAGTACCTTCAGTTTATTGACAATGGCCAATTTGCTGTTGATGGGGTGCTTTCTGATTTCTCTCCCTCTGCTTCTCAAGCCATTGCCTGCTATTCCAGCATTCGGAACAAAGGCAAGCCTCTGCCCGGAATATCGGCGGAAACATTGGTGATAAGCAGAAACGGGGCAAGTGGGGATTATCCAGGCTCAACAGACCTTGCATACCAAGGAGCAATTGATTCTGGGGCTGATGTTATTGATTGTACAGTTCAATTAACAAAAGATGGAGTTGCTTTCTGCACCCAAGAAGTTGATCTTTTGACAAGTACCACTGTCATCACTGGTTTCTCTGCTCGAACTGCATCAGCTCCTGAAATTCAACTAGAACCTGGAATCTTCTCTTTTGATCTTACTTGGGCTGAGATTCAAACTCTCAAGCCTCAAATCATAAGCCCTTTCATATCTTCTGGGCTGACCAGAAATCCTGCCTTTAAGAACAAGGGCAAGATTCTGAGCCTTTCTGAGTTTCTGGAGTTCGCAAAAGCCAAAGCTGTTACTGGGATTATGATCACCATCGAAAACGCAGCCTACTTGGCTTCGAAGAAAGGGTTGGACATGGTGGGAACCGTATCCACGGCCCTGATCAACGCCACTTTCGACAAGCAATCAACACAAAGAGTTTTCATTAAATCAGATGACACTTCTGTGCTGTCCGTCTTCAAAACCAACTTCCCAACTTTCATAAGAGTTTTGAATTTTGATACCAAGTTTGGAAGTGTCCCTAAAAATGTCCTTGAAGAGATCAAACGCTATGCTCAAACTGTCGCCATTCCTCGTGCCTCTGTCATTGAAATAACCAACTATTTCACCACTGGCCTCACTGAAGTCGTCGCTCAAATGAAGGCTGCCAATCTCTCTGTCTTTGTTTATGTCATGAGGAACGAATACGTCTCCTTGGCCTTTGATTTCTACTCCGAAGCCTCCATGGAGGTCTCTACCTATGTCGACTACTTCCACGTCGATGGCGTTATCACTGAATTTCCCAATACTGCAAAGCGATACCTAACGTGTCCATGTCGACCTGTCGAAGAGGACCTGGATTCAAATTCATATTTAATCCTACCACCAGAAGTTGGTGCATTGTTGCAAATAGCGCCTCCAAGGGTTAGACCAAAAACCGATCCTCCATTGCCACCATTGGAGAGCAGAGATATTGCTGACCCGCCGCTCCCACCGTTGTCAGAAGGGTCGTCCACCACCAATTCCACCGCCGGCGGGCCTGCCGCCGCCGCCACCCCATCAACCGCTGTAACGAATGTTGCTAACTTGTTTATTTCTCTACTCTCAGTTGCTGTGCTCACCTTCTTACACTCCCACTCTGCACTGTAA | 2370 | 45.19 | MGDMICGVWKSKRPLSYTVRGLTMLKCLLVIASLILISSAFAQVPDVPKEDEWLTLRGQVPIVIARGGLSGVFPESSPYANQLALVSSLSSTALFCNVQLTKDGVGICLTDLRLQNSTNIEEVFPRAQKSYKINGKVIKGWFSVDYLAESLLNSVGMIQSVLSRPSIFDNTLPIAAVEDIIGIKPGKVWLNADHESFYQEHNLSVTSYIQKALDFRLMRVNFVSSSEIGILKDLSGSVNNATTKLIFRMLEANEIEPTTSKTYGALAKELAMIKTFASGILIRKEFIWPIGKDGYLQPATNLVKDAHKLGLEVYASGFANDAMAGYNYSYDPISEYLQFIDNGQFAVDGVLSDFSPSASQAIACYSSIRNKGKPLPGISAETLVISRNGASGDYPGSTDLAYQGAIDSGADVIDCTVQLTKDGVAFCTQEVDLLTSTTVITGFSARTASAPEIQLEPGIFSFDLTWAEIQTLKPQIISPFISSGLTRNPAFKNKGKILSLSEFLEFAKAKAVTGIMITIENAAYLASKKGLDMVGTVSTALINATFDKQSTQRVFIKSDDTSVLSVFKTNFPTFIRVLNFDTKFGSVPKNVLEEIKRYAQTVAIPRASVIEITNYFTTGLTEVVAQMKAANLSVFVYVMRNEYVSLAFDFYSEASMEVSTYVDYFHVDGVITEFPNTAKRYLTCPCRPVEEDLDSNSYLILPPEVGALLQIAPPRVRPKTDPPLPPLESRDIADPPLPPLSEGSSTTNSTAGGPAAAATPSTAVTNVANLFISLLSVAVLTFLHSHSAL | 789 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 49784813 | 49788934 | - | Lag0013379.1 | Lac1g2887 | 596458 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g2887 | 789 | MobiDBLite | consensus disorder prediction | 716 | 733 | - | - | |
| Lac1g2887 | 789 | SUPERFAMILY | PLC-like phosphodiesterases | 382 | 682 | IPR017946 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Lac1g2887 | 789 | SUPERFAMILY | PLC-like phosphodiesterases | 60 | 359 | IPR017946 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Lac1g2887 | 789 | FunFam | Glycerophosphodiester phosphodiesterase GDPDL3 | 59 | 361 | - | - | |
| Lac1g2887 | 789 | Pfam | Glycerophosphoryl diester phosphodiesterase family | 389 | 677 | IPR030395 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Lac1g2887 | 789 | ProSiteProfiles | GP-PDE domain profile. | 382 | 682 | IPR030395 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Lac1g2887 | 789 | FunFam | Glycerophosphodiester phosphodiesterase GDPDL3 | 380 | 682 | - | - | |
| Lac1g2887 | 789 | MobiDBLite | consensus disorder prediction | 714 | 758 | - | - | |
| Lac1g2887 | 789 | Gene3D | Phosphatidylinositol (PI) phosphodiesterase | 381 | 683 | IPR017946 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Lac1g2887 | 789 | Gene3D | Phosphatidylinositol (PI) phosphodiesterase | 60 | 362 | IPR017946 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Lac1g2887 | 789 | MobiDBLite | consensus disorder prediction | 740 | 758 | - | - | |
| Lac1g2887 | 789 | ProSiteProfiles | GP-PDE domain profile. | 61 | 362 | IPR030395 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Lac1g2887 | 789 | CDD | GDPD_SHV3_repeat_1 | 61 | 361 | - | - | |
| Lac1g2887 | 789 | PANTHER | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE | 25 | 774 | - | GO:0008889(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g2887 | Lac-Chr1:49784813 | Lac2g1467 | Lac-Chr2:12594358 | 3.10E-158 | dispersed | |
| Lac7g1699 | Lac-Chr7:21328725 | Lac1g2887 | Lac-Chr1:49784813 | 1.40E-06 | dispersed |
Pathway information