Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2890 ATGGCTGCTGTCAATCTCCGACCCGACGACGACAATACAATACTCATCTCTCACCTCTATAACCCTGAAATTTACACTCAAATGCTTCCCCAACCACAAGGTACGGCGGCGGAGGGAGCTAAGCCGACGAAGAGACGGCGGAGGAGGAGCAAAGCGAAGGAGGCGGGCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATGAATTTTGGGAACGAGCACAAATTGGAGTCGGAGAGGAAAGATCGGTTGGCTTCTGAACTGGGACTTGATCCACGGCAGGTCGCCGTCTGGTTTCAGAACCGCCGTGCGCGGTGGAAGAACAAGAAGCTCGAAGAGGAATATTCCACTCTCAGAAAAGCTCATGATTCTGTTCTTCTCCAAAAATCCCATCTTGAATCTGAGATGGTGAAACTCAAAGAGCAATTGACACAAGCGAAGAATGAGATACAACAATTGGTAGAACGAAGCGAGAGGATTTCGAGTAACAGCCCGACCTCTTCGGTGACGATGGACGCAGTGCAACCGCCGTCTTTGGGAGATCAGTTATTTTTGGAAGAATATGAAGATGTATTCTATTGCATTCAAGAGAACAATTACAATCAAGGAATGGAGTGGCTTAATCTTTTTATGTAG 660 48.33 MAAVNLRPDDDNTILISHLYNPEIYTQMLPQPQGTAAEGAKPTKRRRRRSKAKEAGGAAGLKKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLRKAHDSVLLQKSHLESEMVKLKEQLTQAKNEIQQLVERSERISSNSPTSSVTMDAVQPPSLGDQLFLEEYEDVFYCIQENNYNQGMEWLNLFM 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49818111 49819519 + Lag0013382.1 Lac1g2890 596461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2890 219 MobiDBLite consensus disorder prediction 27 64 - -
Lac1g2890 219 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac1g2890 219 CDD homeodomain 62 118 IPR001356 GO:0003677(InterPro)
Lac1g2890 219 FunFam homeobox-leucine zipper protein ATHB-40 56 125 - -
Lac1g2890 219 Pfam Homeodomain 63 116 IPR001356 GO:0003677(InterPro)
Lac1g2890 219 SUPERFAMILY Homeodomain-like 62 127 IPR009057 -
Lac1g2890 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 170 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Lac1g2890 219 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677(InterPro)
Lac1g2890 219 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677(InterPro)
Lac1g2890 219 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677(InterPro)
Lac1g2890 219 Gene3D - 56 125 - -
Lac1g2890 219 SMART HOX_1 60 121 IPR001356 GO:0003677(InterPro)
Lac1g2890 219 Coils Coil 109 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2890 Lac-Chr1:49818111 Lac5g2067 Lac-Chr5:39191312 1.60E-48 dispersed
Lac1g2890 Lac-Chr1:49818111 Lac1g2229 Lac-Chr1:43689362 2.50E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23341 PF00046 Homeodomain 6.10E-17 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2890 K09338 - csv:101216890 321.242