Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2890 | ATGGCTGCTGTCAATCTCCGACCCGACGACGACAATACAATACTCATCTCTCACCTCTATAACCCTGAAATTTACACTCAAATGCTTCCCCAACCACAAGGTACGGCGGCGGAGGGAGCTAAGCCGACGAAGAGACGGCGGAGGAGGAGCAAAGCGAAGGAGGCGGGCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATGAATTTTGGGAACGAGCACAAATTGGAGTCGGAGAGGAAAGATCGGTTGGCTTCTGAACTGGGACTTGATCCACGGCAGGTCGCCGTCTGGTTTCAGAACCGCCGTGCGCGGTGGAAGAACAAGAAGCTCGAAGAGGAATATTCCACTCTCAGAAAAGCTCATGATTCTGTTCTTCTCCAAAAATCCCATCTTGAATCTGAGATGGTGAAACTCAAAGAGCAATTGACACAAGCGAAGAATGAGATACAACAATTGGTAGAACGAAGCGAGAGGATTTCGAGTAACAGCCCGACCTCTTCGGTGACGATGGACGCAGTGCAACCGCCGTCTTTGGGAGATCAGTTATTTTTGGAAGAATATGAAGATGTATTCTATTGCATTCAAGAGAACAATTACAATCAAGGAATGGAGTGGCTTAATCTTTTTATGTAG | 660 | 48.33 | MAAVNLRPDDDNTILISHLYNPEIYTQMLPQPQGTAAEGAKPTKRRRRRSKAKEAGGAAGLKKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLRKAHDSVLLQKSHLESEMVKLKEQLTQAKNEIQQLVERSERISSNSPTSSVTMDAVQPPSLGDQLFLEEYEDVFYCIQENNYNQGMEWLNLFM | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 49818111 | 49819519 | + | Lag0013382.1 | Lac1g2890 | 596461 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2890 | 219 | MobiDBLite | consensus disorder prediction | 27 | 64 | - | - | |
Lac1g2890 | 219 | ProSitePatterns | 'Homeobox' domain signature. | 92 | 115 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lac1g2890 | 219 | CDD | homeodomain | 62 | 118 | IPR001356 | GO:0003677(InterPro) | |
Lac1g2890 | 219 | FunFam | homeobox-leucine zipper protein ATHB-40 | 56 | 125 | - | - | |
Lac1g2890 | 219 | Pfam | Homeodomain | 63 | 116 | IPR001356 | GO:0003677(InterPro) | |
Lac1g2890 | 219 | SUPERFAMILY | Homeodomain-like | 62 | 127 | IPR009057 | - | |
Lac1g2890 | 219 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 44 | 170 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Lac1g2890 | 219 | PRINTS | Lambda-repressor HTH signature | 88 | 97 | IPR000047 | GO:0003677(InterPro) | |
Lac1g2890 | 219 | PRINTS | Lambda-repressor HTH signature | 97 | 113 | IPR000047 | GO:0003677(InterPro) | |
Lac1g2890 | 219 | ProSiteProfiles | 'Homeobox' domain profile. | 57 | 117 | IPR001356 | GO:0003677(InterPro) | |
Lac1g2890 | 219 | Gene3D | - | 56 | 125 | - | - | |
Lac1g2890 | 219 | SMART | HOX_1 | 60 | 121 | IPR001356 | GO:0003677(InterPro) | |
Lac1g2890 | 219 | Coils | Coil | 109 | 171 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2890 | Lac-Chr1:49818111 | Lac5g2067 | Lac-Chr5:39191312 | 1.60E-48 | dispersed | |
Lac1g2890 | Lac-Chr1:49818111 | Lac1g2229 | Lac-Chr1:43689362 | 2.50E-20 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23341 | PF00046 | Homeodomain | 6.10E-17 | CL0123 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g2890 | K09338 | - | csv:101216890 | 321.242 |