Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2891 ATGGCGGGCCGTTCCGATGAAGAACACTCTTGCTCTAACTCCAACTCCTTCAAGACAATTGCTGGTGCTTTCAGTCGGTTCATTGGGGACGATGACTCTGAAGATTTGGGCTCCGAGTTCGTCTTCAAGATCGAACCTAGTTTGCTCATTGACCCTTGTTGTTTGAAGATTGGTGAAGTTATTGGCGAAGGTTCATGCTCCATTGTGTATGAAGGACTGTACGATTATCAGCCTGTTGCCGTGAAGATTATACAGCCAAGCAGAACATCAGCTATAAGTACTGAAAAGAAGGAGAGATTTCAGAGGGAGGTTACGTTGCTATCGAGAGTGAATCATGAGAACGTTATTCAGTTCATTGGCGCTTCCATAGAGCCGACATTGATGATAATCACCGAGCTCATGAGAGGTGGAACACTCCAAAAGTACTTGTGGAGCATCCGGCCAGAGACCCCAGATCTGAAGCTTTCCTTAAGTTTTGCTCTAGATCTATCACGAGTAATGGCATACTTACATGCAAATAGCATCATTCATCGCGACTTAAAGCCAAGCAATCTACTGCTGACAGAAGACAAGCAACGGGTTAAGCTGGCTGACTTTGGGTTGGCTAGAGAGGAAATATCTGGTGAAATGACTACTGAGGCTGGTACTTACCGTTGGATGGCCCCTGAGCTATTTAGCATTGATCCATTGCCTGTTGGAGGTAAGAAATGCTATGATCACAAGGCAGATGTCTACAGCTTCTCAATAATTCTTTGGGAATTGATGACAAACAAGACTCCATTCAAGGGCAGAAATAATGTAATGGTGGCATATGCCACAGCCAAGAACATAAGACCAAGTCTTGAGGAAATCCCAGAAGATATTGCTCCTCTCTTGCAGTCATGTTGGGCTGAGGATCCCAATGGCCGTCCGGAATTTACAGAAGTCATAGATTCTCTAAGCAATCTTCTTCAAACTTTTGCCTTAAAAGAATCTTCACTTCCTAACATGGTGGAAACAGAGGAGGCGGTCGAGGGAGCATCAGACACATCGTCTTCTCTGAGCAAGAGAGAGCACAAGCCTGGAAGACATAGAAACTCTTCATTCTGCCTCAACTGTTGCTACAACTTCTGCTTGTCTGATTGA 1125 44.8 MAGRSDEEHSCSNSNSFKTIAGAFSRFIGDDDSEDLGSEFVFKIEPSLLIDPCCLKIGEVIGEGSCSIVYEGLYDYQPVAVKIIQPSRTSAISTEKKERFQREVTLLSRVNHENVIQFIGASIEPTLMIITELMRGGTLQKYLWSIRPETPDLKLSLSFALDLSRVMAYLHANSIIHRDLKPSNLLLTEDKQRVKLADFGLAREEISGEMTTEAGTYRWMAPELFSIDPLPVGGKKCYDHKADVYSFSIILWELMTNKTPFKGRNNVMVAYATAKNIRPSLEEIPEDIAPLLQSCWAEDPNGRPEFTEVIDSLSNLLQTFALKESSLPNMVETEEAVEGASDTSSSLSKREHKPGRHRNSSFCLNCCYNFCLSD 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49823010 49826438 + Lag0013383.1 Lac1g2891 596462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2891 374 SUPERFAMILY Protein kinase-like (PK-like) 52 326 IPR011009 -
Lac1g2891 374 SMART serkin_6 55 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2891 374 Pfam Protein tyrosine and serine/threonine kinase 55 313 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2891 374 MobiDBLite consensus disorder prediction 333 358 - -
Lac1g2891 374 Gene3D Phosphorylase Kinase; domain 1 45 135 - -
Lac1g2891 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2891 374 PRINTS Tyrosine kinase catalytic domain signature 131 144 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2891 374 PRINTS Tyrosine kinase catalytic domain signature 242 264 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2891 374 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2891 374 PRINTS Tyrosine kinase catalytic domain signature 169 187 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g2891 374 CDD STKc_MAP3K-like 61 313 - -
Lac1g2891 374 ProSiteProfiles Protein kinase domain profile. 55 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g2891 374 PANTHER SERINE-THREONINE PROTEIN KINASE 34 317 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac1g2891 374 Gene3D Transferase(Phosphotransferase) domain 1 136 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2891 Lac-Chr1:49823010 Lac3g0141 Lac-Chr3:987103 1.30E-85 dispersed
Lac1g2891 Lac-Chr1:49823010 Lac4g1223 Lac-Chr4:29872632 4.50E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85931 PF07714 PK_Tyr_Ser-Thr 5.80E-55 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2891 - - - 0.0