Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g2892 | ATGGGGACAGGAGAAGAGGGGACGCCTTCTAAAACTTCCAAACCTCCCTCTTCATCTCAGGAAATACCCCCAACACCTTCATTTCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCTGGTGCTACTCCTCCCTTCTTTGCATCTACTGTTGCTTCTCCAACTCCCCACCCTTACATTTGGGGAAGTCAGCATCATATGATTCCACCTTATGGGACTCCAGTACCATATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATCACTGTGACTCCTGGTTCTGCACCAATTAATGCAGAATATGAAGGGAAATCCCCTGATGGAAAAGAAAGGGCCTCAAAAAAATCCAAGGGTACGCCCGGAAATACTGGTTCAGGTGGTGGTAGGACTGGGGAAAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGGTTCTCAAAGTGCTGAAAGTGGTACTGAGGGCTCATCAGAAGGTAGTGATGAGAATGCAAACCATCAGGAATTTACTGCAAATAAGAAGGGAAGCTTCAACCAGATGCTGGCAGATGGAGCTAATGCACAAAACACAACGGGTGGACCAAATACCAAATCTTCAGTGACTGGGAAACCCATCACCTCCGTTCCTGCAACTAATCTCAACATGGGAATGGATTTGTGGAATAACACCACGGCTGCCTCAGGGGCTGCAAAAGCGAGAGCAAATGCCGTTTCCTCAGCTATTGTTCCAGCACCGATGGTTGGTCGTGACGGTGTGATGCCCGAACAATGGGTTCAAGATGAACGTGAGCTAAAAAGACAGAAAAGGAAACAATCTAACCGAGAGTCTGCCCGGAGGTCAAGATTACGTAAGCAGGCGGAGTGCGAAGAATTACAGGCGAGAGTGCAGACATTGAACAACGAGAACCGTACTCTCAGGGATGAGCTACAGAGGCTTTCCGAGGAATGTGAGAAGCTAACATCAGAAAATAGTTCCATCAAGGAAGAATTGACACGATTTTGTGGACCGGAGGCATTAGCTAACTTTGACAAAGGAACTTCTGCTACTCCGGCTGCCCTGTCTCGTGGCGGTGAGGGTAACAACTAA | 1101 | 47.87 | MGTGEEGTPSKTSKPPSSSQEIPPTPSFPDWSSSMQAYYGAGATPPFFASTVASPTPHPYIWGSQHHMIPPYGTPVPYPAIYPPGGVYAHPNITVTPGSAPINAEYEGKSPDGKERASKKSKGTPGNTGSGGGRTGESGKVASSSGNDGGSQSAESGTEGSSEGSDENANHQEFTANKKGSFNQMLADGANAQNTTGGPNTKSSVTGKPITSVPATNLNMGMDLWNNTTAASGAAKARANAVSSAIVPAPMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENSSIKEELTRFCGPEALANFDKGTSATPAALSRGGEGNN | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 49833100 | 49835857 | + | Lag0013384.1 | Lac1g2892 | 596463 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g2892 | 366 | Gene3D | - | 269 | 324 | - | - | |
Lac1g2892 | 366 | MobiDBLite | consensus disorder prediction | 345 | 366 | - | - | |
Lac1g2892 | 366 | MobiDBLite | consensus disorder prediction | 122 | 169 | - | - | |
Lac1g2892 | 366 | Pfam | G-box binding protein MFMR | 1 | 93 | IPR012900 | - | |
Lac1g2892 | 366 | Coils | Coil | 279 | 334 | - | - | |
Lac1g2892 | 366 | Pfam | bZIP transcription factor | 266 | 328 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2892 | 366 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 273 | 288 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2892 | 366 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 18 | 344 | IPR044827 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER) | |
Lac1g2892 | 366 | MobiDBLite | consensus disorder prediction | 189 | 210 | - | - | |
Lac1g2892 | 366 | MobiDBLite | consensus disorder prediction | 266 | 288 | - | - | |
Lac1g2892 | 366 | SUPERFAMILY | Leucine zipper domain | 269 | 325 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2892 | 366 | SMART | brlzneu | 266 | 330 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2892 | 366 | FunFam | BZIP transcription factor | 268 | 319 | - | - | |
Lac1g2892 | 366 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 268 | 331 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g2892 | 366 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Lac1g2892 | 366 | MobiDBLite | consensus disorder prediction | 99 | 169 | - | - | |
Lac1g2892 | 366 | CDD | bZIP_plant_GBF1 | 271 | 321 | IPR045314 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2454 | Lac-Chr11:40730895 | Lac1g2892 | Lac-Chr1:49833100 | 5.20E-28 | dispersed | |
Lac1g2892 | Lac-Chr1:49833100 | Lac7g0175 | Lac-Chr7:1404184 | 4.30E-25 | dispersed | |
Lac1g2892 | Lac-Chr1:49833100 | Lac5g0179 | Lac-Chr5:1506080 | 4.20E-33 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23342 | PF07777 | MFMR | 8.60E-31 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g2892 | K09060 | - | csv:101217128 | 603.979 |