Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g2892 ATGGGGACAGGAGAAGAGGGGACGCCTTCTAAAACTTCCAAACCTCCCTCTTCATCTCAGGAAATACCCCCAACACCTTCATTTCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCTGGTGCTACTCCTCCCTTCTTTGCATCTACTGTTGCTTCTCCAACTCCCCACCCTTACATTTGGGGAAGTCAGCATCATATGATTCCACCTTATGGGACTCCAGTACCATATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATCACTGTGACTCCTGGTTCTGCACCAATTAATGCAGAATATGAAGGGAAATCCCCTGATGGAAAAGAAAGGGCCTCAAAAAAATCCAAGGGTACGCCCGGAAATACTGGTTCAGGTGGTGGTAGGACTGGGGAAAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGGTTCTCAAAGTGCTGAAAGTGGTACTGAGGGCTCATCAGAAGGTAGTGATGAGAATGCAAACCATCAGGAATTTACTGCAAATAAGAAGGGAAGCTTCAACCAGATGCTGGCAGATGGAGCTAATGCACAAAACACAACGGGTGGACCAAATACCAAATCTTCAGTGACTGGGAAACCCATCACCTCCGTTCCTGCAACTAATCTCAACATGGGAATGGATTTGTGGAATAACACCACGGCTGCCTCAGGGGCTGCAAAAGCGAGAGCAAATGCCGTTTCCTCAGCTATTGTTCCAGCACCGATGGTTGGTCGTGACGGTGTGATGCCCGAACAATGGGTTCAAGATGAACGTGAGCTAAAAAGACAGAAAAGGAAACAATCTAACCGAGAGTCTGCCCGGAGGTCAAGATTACGTAAGCAGGCGGAGTGCGAAGAATTACAGGCGAGAGTGCAGACATTGAACAACGAGAACCGTACTCTCAGGGATGAGCTACAGAGGCTTTCCGAGGAATGTGAGAAGCTAACATCAGAAAATAGTTCCATCAAGGAAGAATTGACACGATTTTGTGGACCGGAGGCATTAGCTAACTTTGACAAAGGAACTTCTGCTACTCCGGCTGCCCTGTCTCGTGGCGGTGAGGGTAACAACTAA 1101 47.87 MGTGEEGTPSKTSKPPSSSQEIPPTPSFPDWSSSMQAYYGAGATPPFFASTVASPTPHPYIWGSQHHMIPPYGTPVPYPAIYPPGGVYAHPNITVTPGSAPINAEYEGKSPDGKERASKKSKGTPGNTGSGGGRTGESGKVASSSGNDGGSQSAESGTEGSSEGSDENANHQEFTANKKGSFNQMLADGANAQNTTGGPNTKSSVTGKPITSVPATNLNMGMDLWNNTTAASGAAKARANAVSSAIVPAPMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENSSIKEELTRFCGPEALANFDKGTSATPAALSRGGEGNN 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49833100 49835857 + Lag0013384.1 Lac1g2892 596463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g2892 366 Gene3D - 269 324 - -
Lac1g2892 366 MobiDBLite consensus disorder prediction 345 366 - -
Lac1g2892 366 MobiDBLite consensus disorder prediction 122 169 - -
Lac1g2892 366 Pfam G-box binding protein MFMR 1 93 IPR012900 -
Lac1g2892 366 Coils Coil 279 334 - -
Lac1g2892 366 Pfam bZIP transcription factor 266 328 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2892 366 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 273 288 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2892 366 PANTHER G-BOX-BINDING FACTOR 3-RELATED 18 344 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Lac1g2892 366 MobiDBLite consensus disorder prediction 189 210 - -
Lac1g2892 366 MobiDBLite consensus disorder prediction 266 288 - -
Lac1g2892 366 SUPERFAMILY Leucine zipper domain 269 325 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2892 366 SMART brlzneu 266 330 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2892 366 FunFam BZIP transcription factor 268 319 - -
Lac1g2892 366 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 268 331 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g2892 366 MobiDBLite consensus disorder prediction 1 35 - -
Lac1g2892 366 MobiDBLite consensus disorder prediction 99 169 - -
Lac1g2892 366 CDD bZIP_plant_GBF1 271 321 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2454 Lac-Chr11:40730895 Lac1g2892 Lac-Chr1:49833100 5.20E-28 dispersed
Lac1g2892 Lac-Chr1:49833100 Lac7g0175 Lac-Chr7:1404184 4.30E-25 dispersed
Lac1g2892 Lac-Chr1:49833100 Lac5g0179 Lac-Chr5:1506080 4.20E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23342 PF07777 MFMR 8.60E-31 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g2892 K09060 - csv:101217128 603.979